Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| SS Seq | CCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCSSSSSSSSCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHCCSSSSC MLPAAARPLWGPCLGLRAAAFRLARRQVPCVCAVRHMRSSGHQRCEALAGAPLDNAPKEYPPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLVPMGGVMSGAVPAAAAQEAVEEDIPIAKERTHFTVRLTEAKPVDKVKLIKEIKNYIQGINLVQAKKLVESLPQEIKANVAKAEAEKIKAALEAVGGTVVLE |
1 | 3jbrF | 0.08 | 0.07 | 2.56 | 0.67 | DEthreader | | -GGGG---E-NNARQLVEIAARDIEKLLSNRSKALVRLALEAEKVQAAHQWR-------YYYIQEYLDVLGR------QWT-NVY-LDALLVITGTLPV------RFMDGESG-EK--TFRTLVKDKGGGGGGGG-GGGGGGG-GGGGG-GGGGGGGGGGGGGGGGG--GG--G------G-GGGCITEQTQYFFDDI |
2 | 1dd4A | 0.33 | 0.21 | 6.22 | 1.62 | SPARKS-K | | -------------------------------------------------------------MTIDEIIEAIEKLTVSELAELVKKLEDKFGVTAAAPVAVAAAPVAGAAAGAAQE----------EKTEFDVVLKSFGQN-KIQVIKVVREITG-LGLKEAKDLVEKADAVIKSGVSKEEAEEIKKKLEEAGAEVELK |
3 | 1dd4A | 0.27 | 0.17 | 5.27 | 1.11 | MapAlign | | ------MTIDEIIEAI----------------------------------------EKLTVSELAELVKKL--EDKFGVTAAAPVAVAA--------------------APVAGAAAG---AAQEEKTEFDVVLKSFG-QNKIQVIKVVREITG-LGLKEAKDLVEKAGAVIKSGVSKEEAEEIKKKLEEAGAEVELK |
4 | 1dd4A | 0.34 | 0.21 | 6.36 | 0.98 | CEthreader | | -------------------------------------------------------------MTIDEIIEAIEKLTVSELAELVKKLEDKFGVTAAAPVAVAAAPVAGAAAGAAQE----------EKTEFDVVLKSFGQN-KIQVIKVVREI-TGLGLKEAKDLVEKAGAVIKSGVSKEEAEEIKKKLEEAGAEVELK |
5 | 1dd4A | 0.33 | 0.21 | 6.22 | 1.48 | MUSTER | | -------------------------------------------------------------MTIDEIIEAIEKLTVSELAELVKKLEDKFGVTAAAPVAVAAAPVAGAAAGAAQ----------EEKTEFDVVLKSFGQ-NKIQVIKVVREI-TGLGLKEAKDLVEKADAVIKSGVSKEEAEEIKKKLEEAGAEVELK |
6 | 2ftcF | 0.91 | 0.63 | 17.60 | 4.63 | HHsearch | | -------------------------------------------------------------PKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLMPMGGMVPGAAPAPTAPEAAEEDVPKQKERTHFTVRLTEAKPVDKVKLIKEIKNYVQGINLVQAKKLVESLPQEIKANVAKAEAEKIKAALEAVGGTVVLE |
7 | 2ftcF | 0.91 | 0.63 | 17.60 | 1.54 | FFAS-3D | | -------------------------------------------------------------PKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLMPMGGMVPGAAPAPTAPEAAEEDVPKQKERTHFTVRLTEAKPVDKVKLIKEIKNYVQGINLVQAKKLVESLPQEIKANVAKAEAEKIKAALEAVGGTVVLE |
8 | 1dd4A | 0.32 | 0.20 | 6.09 | 0.80 | EigenThreader | | -----------------------------------------------------------MTIDEI--IEAIEKLTVSELAELVKKLEDKFGVTAAAPVAVAAAPVAGAAAGAAQE----------EKTEFDVVLKSFG-QNKIQVIKVVREITG-LGLKEAKDLVEKAGAVIKSGVSKEEAEEIKKKLEEAGAEVELK |
9 | 2ftcE | 0.91 | 0.63 | 17.60 | 1.13 | CNFpred | | -------------------------------------------------------------PKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLMPMGGMVPGAAPAPTAPEAAEEDVPKQKERTHFTVRLTEAKPVDKVKLIKEIKNYVQGINLVQAKKLVESLPQEIKANVAKAEAEKIKAALEAVGGTVVLE |
10 | 7abis | 0.06 | 0.05 | 2.03 | 0.67 | DEthreader | | RQVL-DLE-DLVFTQGSHFMA-K-----EVTYVGIVEKIMEHAGKLG---REGSASEVLRTEAEQCKNLLIHHAGM-RSTTLAWGV-NLPAHTVII-K----G-TQVYSPKGRWT---VSKLPDLEINVQKPHAIVIVFVPSRKQTRLTAIDLTAQETLGVGIVVAHLVI--------------I--MDTQYVIMC-- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
|