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Template proteins with similar binding site:
Click to view | Rank | CscoreLB | PDB Hit | TM-score | RMSDa | IDENa | Cov. | BS-score | Lig. Name | Download Complex | Predicted binding site residues |
| 1 | 0.01 | 1g3n1 | 0.564 | 3.50 | 0.107 | 0.687 | 0.21 | III | complex1.pdb.gz | 114,115,147,148,151,152,156,157,158,160 |
| 2 | 0.01 | 3s29B | 0.410 | 6.49 | 0.062 | 0.684 | 0.13 | UDP | complex2.pdb.gz | 72,80,84 |
| 3 | 0.01 | 1qhaA | 0.350 | 6.55 | 0.033 | 0.604 | 0.18 | GLC | complex3.pdb.gz | 160,161,204 |
| 4 | 0.01 | 1bg3A | 0.353 | 6.70 | 0.036 | 0.625 | 0.24 | G6P | complex4.pdb.gz | 82,83,163,202 |
| 5 | 0.01 | 3s27B | 0.410 | 6.47 | 0.036 | 0.687 | 0.17 | FRU | complex5.pdb.gz | 71,79,80,117 |
| Click on the radio buttons to visualize predicted binding site and residues. |
(a) | CscoreLB is the confidence score of predicted binding site. CscoreLB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction. |
(b) | BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
| (c) | TM-score is a measure of global structural similarity between query and template protein. |
(d) | RMSDa the RMSD between residues that are structurally aligned by TM-align. |
(e) | IDENa is the percentage sequence identity in the structurally aligned region. |
(f) | Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein. |
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