Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480
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| SS Seq | CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSSSSSCCCCCCCCCCSSSSSCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC MVAGMLGLREEKSEDQDLQGLKDKPLKFKKVKKDKKEEKEGKHEPVQPSAHHSAEPAEAGKAETSEGSGSAPAVPEASASPKQRRSIIRDRGPMYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFDFTVTGRGSPSRREQKPPKKPKSPKAPGTGRGRGRPKGSGTTRPKAATSEGVQVKRVLEKSPGKLLVKMPFQTSPGGKAEGGGATTSTQVMVIKRPGRKRKAEADPQAIPKKRGRKPGSVVAAAAAEAKKKAVKESSIRSVQETVLPIKKRKTRETVSIEVKEVVKPLLVSTLGEKSGKGLKTCKSPGRKSKESSPKGRSSSASSPPKKEHHHHHHHSESPKAPVPLLPPLPPPPPEPESSEDPTSPPEPQDLSSSVCKEEKMPRGGSLESDGCPKEPAKTQPAVATAATAAEKYKHRGEGERKDIVSSSMPRPNREEPVDSRTPVTERVS |
1 | 6chgD | 0.07 | 0.06 | 2.45 | 0.87 | CEthreader | | --------------------------------------------ANLLLQDPFGVLKEYPEKLTHTLEVPVAAVCVKFSPRGDYLAVGCSNGAIIIYDMDSLKPIAMLGTHSGAHTRSVQSVCWSNDGRYLWSSGRDWYAKLWDMTQPTKCFQQYKFDGPLWSCHVVRWNVCIVTVVEEPTAYVLTLTDRQNAFHCFPLLEQDQDISGHGYTLVACPHPTIESIII----TGTSKGWINAFQLDLEDKIRCCYEEKIANANIKQIIISPSGTRIAINGSDRTIRQYQLIVEHSVSIELEHKYQDIINRLQWNTIFFSNHSGEYLVASAHGSSAHDLYLWETSSGSLVRVLEGADEELLDIDWNFYSMRIASNGFESGWVYMWSIVIPPKWSALAPDFEEVEENIDYQEKENEFDIEEIAIDLCTPEKYDVRGNDISMPSFVIPIDYEGVIIQQHWA------------------------------ |
2 | 6gmhQ | 0.10 | 0.09 | 3.43 | 0.85 | EigenThreader | | GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG---GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG----GGGGGGGGGGVEAMQAESCYQLARSFHVQDQAFQYYYQATQFASSS-------------------------FVLPFFGLGQMYIYRGDKENASQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDLARLYEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEKQPSTQSDTYSMLALG |
3 | 1ub1A | 0.97 | 0.25 | 6.98 | 1.17 | FFAS-3D | | ----------------------------------------------------------------------APAVPEASASPKQRRSIIRDRGPMYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFDFTVTGRGSPSRREQRPPKKAKSPKSPGSGRGRGRPKGSG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
4 | 5jcss | 0.11 | 0.11 | 3.85 | 1.40 | SPARKS-K | | VLSILLSLLEKRELTIPSRGETVKAANINEDHQKDSSNKIYNLNMIGMRIWNVIELEEPSEEDLTHILAQKFPILTNLIPKKSIYMNTKFISLNKGAHTRVVSLCERLDILFKNNGIN-------KPDQLIQSSVYDSIFSEAADCFAGAEFKALEPIISLDIASSRISLFLTQHVPTLENLDDSIKIGRLNIQKKSMNSTLFAFTNHSLRLMEQTEPVLLV----------GETGTGKTTVVQQLAKMLAKKLTVINVSQQTKPKTVAVPIQENFETLFNATFSLKKNEKFHKMLHRCFNKNQWKNVVKLWNEAYKMAQSILKITNTEENENAKKKKRRLNTHEKKLLLDKWADFNDSEAQSSSIENSFVFNFVEGSLEPDSRSILLSEKGDAPATDVGKRDLPMGIRSRHSPERDITDLLSIIDKYIGKYSVSDE--WVGNDIAELYLEAKKLSDNNTIVDGSNQKPDIIHIYGLRRSLYDGFC |
5 | 1ub1A | 0.97 | 0.25 | 6.98 | 2.08 | CNFpred | | ----------------------------------------------------------------------APAVPEASASPKQRRSIIRDRGPMYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFDFTVTGRGSPSRREQRPPKKAKSPKSPGSGRGRGRPKGSG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
6 | 6ez8A | 0.07 | 0.04 | 1.68 | 0.67 | DEthreader | | SFGNFANDEIKLKAFIANLTAAGSAVSICQHSR----------------YLVPLLPQLVVYPPPELL-----AVGGIAPLCALHPLSILCLGLQLIDVLLETLAEIDFRLVSFLEAKA----------------R----------AD-VV----------------------------------------------------------------------------------------------V-ILVLFQKVVVMLLRLIQY-------LSRQIADIILPLLLRSMFVIFRFLLQVGLNLRWWATPNIAIQCRLCLSGLAQR------DKDWYHL-SQSALEGELVNRIP--------------------------------NLSLLTARVSGTVQQLPAVHHVFQPEPVVALCLAL-LPGLWSV-VSSTEFVTHACLIACMVAEMVESLQSVA-YTRVPPSPKPG--FG-------------- |
7 | 7khbC | 0.04 | 0.04 | 1.99 | 1.39 | MapAlign | | AVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKVHPTHYGRVCPIETPEGPNIGLINSLSFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQSNLDEEGHFVEDLVTCRSKGESSLFSRTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVILPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDK------------------------------MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALETLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVL |
8 | 2nbiA | 0.13 | 0.13 | 4.47 | 1.12 | MUSTER | | SDLNPSSQPSECADVLEECPIDECFLPYSDASRPPSCLSFGRPDCDVLPTPQNINCPRCCATECRPDNPMFTPSPDGSP-PICSPTMLPTNQPTPPEPSSAPSDCGEVIEECPLDTCFL-------PTSDPARPP-DCTAVGRPDCDVLPFPNNLGCCCPFECSPDNPMFTPSPDGSPPNCSPTMLPTPQPSTPTVITSPAPSSQPSQCAEVIEQCPID--CFLPYGDSSRPLDCTDPAVNRPDCDVLPTPQNINCPACCAECRPDNPMFTPSPDGSPPICSPTMMPSPEPSSQPSD--CGEVIEECPIDACFLPKSDSARPPDCTAVGRPDCNVLPFPNNPFECSPDNTPSPDGSPPNCSPTMLPSPSPSAVTVPLTPAPSSAPTRQPSSQPTGPQPSSQPSECADVLELCPYDTCFLPFDDSSRPPDCTDPSVNRPDCDKLSTAIDFTPTCCPTQCRPDNPMFSPSPDGSPPVCSPTMMPSPLP |
9 | 1ub1A | 0.97 | 0.25 | 6.98 | 6.83 | HHsearch | | ----------------------------------------------------------------------APAVPEASASPKQRRSIIRDRGPMYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFDFTVTGRGSPSRREQRPPKKAKSPKSPGSGRGRGRPKGSG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
10 | 2fjeA | 0.07 | 0.07 | 2.89 | 0.84 | CEthreader | | GAAYEAAYWAKLGGLKVTLVEKAAVERSGAVAQGLSAINTYIDLTGRSERQNTLEDYVRYVTLDMMGLAREDLVADYARHVDGTVHLFEKWGLPIWKTPDGKYVREGQWQIMIHGESYKPIIAEAAKMAVGEENIYERVFIFELLKDKNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGATLLFRPRSTGEAAGRTWYAIFDTGSGYYMGLKAGAMLTQFEHRFIPFRFKDGYGPVGAWFLFFKCKAKNAYGEEYIKTRAAELEKYKPYGAAQPIPTPLRNHQVMLEIMDGNQPIYMHTEEALAELAGGDKKKLKHIYEEAFEDFLDMTVSQALLWACQNIDPQEQPSEAAPAEPYIMGSHSGEAGFWVCGPEDLMPEEYAKLFPLKYNRMTTVKGLFAIGDCAGANPKAAVRFILEQKPNPEIDDAVVEELKKKAYAPMERFMQYKDLSTADDVNPEYILPWQGLVRLQKIMDEYAAGIATIY |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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