Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 560 580 600 620
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| SS Seq | CCCCCCCCCCCCCSSSSSSSSSCCCCCCSSSSSSSSCCCCSSSSCCCCSSSSSSSCCCCCCCSSSSSSCCCCCCCCCCCCSSSCCCCCSSSSCCCCCCCCSSSSCCCSSSSSCCCCHHHCSSSSSSSSSCCCCSSSSSSSSSSSCCCCCCSSCCCCCCSSSSSCCCSSSSSSSCCCCCCCCSSSSSSCCSSCCCCCCCCCCCCCCCSSSSCCCCSSSSSSSSSSSCCCCCCCSSSSSSSSSCCCCCCCCCSSSSSSSSSSSCCCCCCCSSCCCCCCCCSSSCCCCSSSSSSSSSSCCCCSSSSSSCCCCCCCSSSSCCCCSSSSCCCCHHHCSSSSSSSSSCCCCSSSSSSSSSSSSCCCCCCSSSCCCCCSSSSCCCCSSSSSSSSSSCCCSSSSSSCCSSCCCCCSSSSCCCCHHHCSSSSSSSSSCCCCCSSSSSSSSSSSSCCCCCCCCCCCCCCCSSSSCCCSSSSSSSSSSCCCCSSSSSSCCSSCCCCCCCSSSSSCCSSSSSSCCHHHCSSSSSSSSSCCCCSSSSSSSSSSCCCCCCCCCCSSSSSSSSSSSSSSSSSSSSSSSCCCCCSSSSSSCCSSCCCCCSSSSCCCCCCCCCSSSSSSSCCCCCCCCCCCCCCC MEPPDAPAQARGAPRLLLLAVLLAAHPDAQAEVRLSVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTLHYPTEHVQFWVGSPSTPAGWVREGDTVQLLCRGDGSPSPEYTLFRLQDEQEEVLNVNLEGNLTLEGVTRGQSGTYGCRVEDYDAADDVQLSKTLELRVAYLDPLELSEGKVLSLPLNSSAVVNCSVHGLPTPALRWTKDSTPLGDGPMLSLSSITFDSNGTYVCEASLPTVPVLSRTQNFTLLVQGSPELKTAEIEPKADGSWREGDEVTLICSARGHPDPKLSWSQLGGSPAEPIPGRQGWVSSSLTLKVTSALSRDGISCEASNPHGNKRHVFHFGTVSPQTSQAGVAVMAVAVSVGLLLLVVAVFYCVRRKGGPCCRQRREKGAPPPGEPGLSHSGSEQPEQTGLLMGGASGGARGGSGGFGDEC |
1 | 1e07A | 0.10 | 0.07 | 2.44 | 0.83 | DEthreader | | ---------------------GKEVQNIIQYPELPKPSISSNKVDAVAFTCEPETQ-----DATYLWWVN---N-Q-----------------SLPVSPRLQLSN--GNRTLTLFVDTASYKCETQNPVS--ARRSDSVILNVLYPDAPTISPLN--TSYRSGENLNLSCHAASNP---PAQYSWFV-NGTFQQST---------QE-------------LFIPNITVNNS-GSYTCQAHNSDT---GLNRTT-VTTITVYA-EPPKP-FITSN--NSNPVEDDAVALTCEPEIQNTTYLWWVNNQ---SLPVSPRLQLNRTLTLLSVTRNDVGPYECGIQ-E----DHSDPVILNVLYPDDPTISPSYTYYRPGV-N-LSLSCHAASNPPAQYSWLIDGNIQQHTLFISNI-TEK-NSGLYTCQANNSASGHSRTTVKTITVSAELPKPSI-SSNN-K---------AFTCEPEAQNTTYLWWVN--PVSPRLQL-S-NGN--RTLTL--------ARAYVCGIQANRSDPVTLD-------PIIS--PPDSSYLSGANLN------------------------------------------------------------------ |
2 | 3dmkA | 0.16 | 0.14 | 4.60 | 1.11 | MapAlign | | ----------------------------KGPVFLKEPTNRIDFSNSTGAEIECKASGNP-MPEIIWIRS----DGTAVG-----------------DVPGLRQISSDGKLVFPPFDYVHAQVYACLARNQ-FGSIISDVHVRAVVAY-EADVN----KEHVIR-GNSAVIKCLIPFVADFVEVVWHTDEEENYFPGAEYDGKYLVLP-----------SGELHIEVGPEDGYKSYQCRTKHRLT---GETRLSTKGRLVITPAVPKVVSLAKFD---MKTYSGSSTMALLCPAQGYPVPVFRWYKFGTTRKQAVVKQVSGTLIIKDAVVEDSGKYLCVVNNSV----GGESVETVLTVTA--PLSAKIPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSSVLRIESVKKEDKGMYQCFVRNDR---ESAEASAELKLGDPPVIRQA-FQE---ETMEPGPSVFLKCVAGGNPTPEISWELDGKKIQVGQYVTNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQV |
3 | 3b43A | 0.16 | 0.12 | 4.12 | 2.14 | SPARKS-K | | ASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKLPKDVHETLGFPVAFECRINGSEP-LQVSWYKDGE---------------------LLKDDANLQTSFIHNATLQILQTDQSHVGQYNCSASNP-LGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGE-SGTFKCHVTGT-APIKITWAKDNREIR------PGGNYKMTLVEN-------TATLTVLKVTKGDAGQYTCYASNVAG------KDSCSAQLGVQEPP-----RFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDEESSKFRMSFVSVAVLEMYNLSVEDSGDYTCEAHNAAGS----ASSSTSLKVKE-PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGTSIHILNVDSADIGEYQCKASNDVG---SDTCVGSITLKAPPRFVKK----LSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVLE--------------------------------------------------------------------------------------- |
4 | 3b43A | 0.16 | 0.14 | 4.56 | 0.61 | CEthreader | | ---------------------------AMEPPYFIEPLEHVEAAIGEPITLQCKVDGTPE-IRIAWYKEHTKLRSAPAYKMQFKN--------------------NVASLVINKVDHSDVGEYTCKAENS-VGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRI--NGSEPLQVSWYKDGELLKDDANLQT-------------SFIHNVATLQILQTDQSHVGQYNCSASNPLG------TASSSAKLTLSEHEVPPFFDLKPV---SVDLALGESGTFKCHVTGTAPIKITWAKDPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASN----VAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQSVAVLEMYNLSVEDSGDYTCEAHNAAG---SASSSTSLKVKEPPVFR----KKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECF |
5 | 3b43A | 0.17 | 0.14 | 4.76 | 1.79 | MUSTER | | ---------------------------AMEPPYFIEPLEHVEAAIGEPITLQCKVDG-TPEIRIAWYKEHTKLRSAPAYKMQFKN--------------------NVASLVINKVDHSDVGEYTCKAENS-VGAVASSAVLVIKERKLPPSFARKLKDVHETL-GFPVAFECRI-NGSEPLQVSWYKDGELLKDDAN-------LQTSFIHN------VATLQILQTDQSHVGQYNCSASNPLGTA------SSSAKLTLSEHEVPPFFDL---KPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPMTLVENTATLTVLKVTKGDAGQYTCYASNVA----GKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSVLEMYNLSVEDSGDYTCEAHNAAGSA---SSSTSLKVKEPPVFRK----KPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSELTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATI------EGAEPISVAWFKDKVRESDNIWISYSENIEPANAGKYTCQIKNEAGT------QEC |
6 | 3b43A | 0.17 | 0.15 | 4.86 | 0.87 | HHsearch | | ---------------------------AMEPPYFIEPLEHVEAAIGEPITLQCKVDGTP-EIRIAWYKEHTKLRSAPAYK--------------------MQFKNNVASLVINKVDHSDVGEYTCKAEN-SVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFP-VAFECRI-NGSEPLQVSWYKDGELLKDDANLQ--------TSF-I----HNVATLQILQTDQSHVGQYNCSASNPLGT------ASSSAKLTLSEHEVPPFFDL-KPVS--VDLALGESGTFKCHVTGTAPIKITWAKDNREIRKMTLVENTATLTVLKVTKGDAGQYTCYASNVAG----KDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESAVLEMYNLSVEDSGDYTCEAHNAAG---SASSSTSLKVKEPPVFRKK----PHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANA--GKYTCQIKNEAG----TQEC |
7 | 3b43A | 0.15 | 0.11 | 3.81 | 3.30 | FFAS-3D | | -----NKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKDVHETLGFPVAFECRING-SEPLQVSWYKDGELLKDDANLQTSFIH--------------------NVATLQILQTDQSHVGQYNCSASNPL-GTASSSAKLTLSEHEVPPFFDLKPVSVDLALGES--GTFKCHVTGTAPIKITWAKDNREIRPGGN-------YKMTLVEN------TATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV-----------QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK-----EPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKSIHILNVDSADIGEYQCKASNDVG---SDTCVGSITLKA----PPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNSYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVLE--------------------------------------------------------------------------------------- |
8 | 1e07A | 0.16 | 0.14 | 4.65 | 1.08 | MapAlign | | -------------------------------KLTI-ESTPFNVAEGKEVLLLVHNLPQH-LFGYSWYKGERVDGNRQIIGYV----IGTQQATPG----PAYSGRPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISS-NNSKPVEDK-DAVAFTCEPETQDA-TYLWWVNNQSLP--------VSPRLQLS--------NGNRTLTLFNVTRNDTASYKCETQNPVS---ARRSDS-VILNVLYGPPPKPFITSNN----SNPVEDEDAVALTCEPEIQNTTYLWWVNNQ-SLPVSPRLQLNRTLTLLSVTRNDVGPYECGIQNEL--SVDHSDPVILNVLYPDDPTISPSYTYYRPGV--NLSLSCHAASNPPAQYSWLIDGNIQQHTLFISNI-TEK-NSGLYTCQANNSAS-GHSRTTVKTITVAELPKPSISSNNS---KPVEDKDAVAFTCEPEAQNTTYLWWVNGQSLPVSPRLQLS-NGNRTLTLFNVTRNDARAYVCGIQNVSNRSDPVTLDVLYG-----PDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHTQVLFIAKITPNNNGTYACFVSNLATGRNNSIVKSITV |
9 | 3b43A | 0.16 | 0.11 | 3.67 | 1.18 | EigenThreader | | --------------------------AMEPPYF-IEPLEHVEAAIGEPITLKVDG----TPEIRIAWYKEHTKL---------------------RSAPAYKMQFKNNSLVINKVDHSDVGEYTCKAENS-VGAVASSAVLVIKSEHEVPPLKPVSV-DLALGESGTFKCHVTGTA---PIKITWAKDNREIRPGG-----NYKMTLVE--------NTATLTVLKVTKGDAGQYTCYASNV------AGKDS--CSAQLGVQEPPRFIKK-LEPSRIVKQ-DEHTRYECKIGGSP-EIKVLWYKDESSKFRMSFVES--VAVLEVEDS---GDYTCEAHNAAGSA----SSSTSLKVKEPPVF-RKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGFLTSIHNVDSADIGEYQCKASND---VGSDTCVGSITLKAPPRFVK-KLSDISTV---VGEEVQLQATIEGAEPISVAWFKDKGVRESDNIYSENIATLQFS----RAEPANAYTCQIKNEAGTQECFATLS--------VLE------------------------------------------------------------------------------- |
10 | 3dmkA | 0.16 | 0.14 | 4.59 | 1.95 | SPARKS-K | | GELHIREVGPEDGKSYQCRTKHRLTLSATKGRLVITEPDMKTYSGSSTMALLCPAQGYP-VPVFRWYKFIEGTTRKQAV---------------VLNDRVKQVS---GTLIIKDAVVEDSGKYLCVVNN-SVGGESVETVLTVTA---PLSAKIDPPTQTVDFGRP-AVFTCQYTGNPIK-TVSWMKDGKAIGHSESV-----------------------LRIESVKKEDKGMYQCFVRNDRE--------SAEASAELKLGGRFDPPVIRQAFQEE-TMEPGPSVFLKCVAGGNPTPEISWELDGKANNDRYQVGQYSYLNITSVHANDGGLYKCIAKSKV----GVAEHSAKLNVYG--LPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPPNGTLIIENVERSDQATYTCVAKNQEGY--SARGSLEVQVMVLPRIIPFAF---EEGPAQVGQYLTLHCSVPGGDPLNIDWTLDGQAISEDLGITTSRVGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEP-------------------------TDKAFAQGSDGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGI |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
|