Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| SS Seq | CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC RTTLTITQPRPTLTLSQAPQPGPRTPGLLKVPGSIALPVQTLVSARAAAPPQPSPPPTKFIVMSSSSSAPSTQQVLSLSTSAPGSGSTTTSPVTTTVPSVQPIVKLVSTATTAPPSTAPSGPGSVQKYIVVSLPPTGEGKGGPTSHPSPVPPPASSPSPLSGSALCGGKQEAGDSPPPAPGTPKANGSQPNSGSPQPAP |
1 | 6xr4A | 0.09 | 0.09 | 3.22 | 0.57 | CEthreader | | GYTSEEVADSRILCLALVHLPVEKESWIVSGTQSGTL--LVINTEDGKKRHTLEKMTDSVTCLYCNSFQKNFLLVGTADGKLAGNVSTPLMCLSEVMWGGCGTKIFSFSNDF-----------TIQKLIETRTSQLFSYAAFSDSNIITVVVDTALYIAKQNSPVVEVWDKKTEKL-----CGLIDCVHFLREMSYSGR |
2 | 3ke6A | 0.07 | 0.07 | 2.74 | 0.57 | EigenThreader | | GAMVSVPVVPGADIAAAAEDTAAGGDWFDALDRLVLV---VGDVVGHGHKQVPGSKSATMCVGSLDFTSGEFQ-YCTAGHPPPADASEPTGAGPLGSGTGFPVAILFYTDGLIERPGTGYNDDVTL-LAMQRRAPTPPTINAARTVRAQLREWLAEIGADHSDIADIVHAISEFVENAVEHGYATGQWGLAMAEALVSE |
3 | 1vowD | 0.14 | 0.14 | 4.77 | 0.44 | FFAS-3D | | ---LTKKRPEKALTEALPKTGGRNNRGRITSGGGHKRLYRIIDFKRRDKSGVNDPNRSARIALLHYAD-GEKRYILAPEGLTVGATVNAGPEAEPKLGNALPLRFVPVGAVVHALELVPGKGAQLARYVIVRLPSGELRRGNAEHKNIVLGKAGRSRWLGRKPHQRGSAMNPVDHPHGGGEGRTGAGRVPVTPWGKPT- |
4 | 4k0mC | 0.09 | 0.08 | 2.88 | 0.77 | SPARKS-K | | AARTAKFDETVEVHAKLGIDSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYV--GGEEIIQAA-------AAAAAAAAAAAAAAAAAAAA--------AAAAAAAAAAAAAAAAAA-----------AAAAAAAAAAAAAAAAAAA---AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
5 | 5y2zB | 0.16 | 0.05 | 1.50 | 0.53 | CNFpred | | ---------------------------------------------------------DEYVVIAQP----FTGKCIFLEWDHVEKTFRNYDNITGT---STVVCKPIVIE--------------TQLYVIVAQL----------------------------------------------------------------- |
6 | 3ikmD1 | 0.06 | 0.05 | 1.98 | 0.67 | DEthreader | | ----LLQAQLPPKPPADVEVCLACPTLAV-A----ISPSAWYSTASSTQRDWQEQLVVGHNV----------SFDAHIRQYLI-----Q-G-S---RMRFL-T----P-LEKEPRELFVKILMYCDVTHFQPTLAGMLE------VSY-LPVNQNWELISSQMVILPQVVTAGTTRRA-ADVDE-TPVWQS--V-ISIH |
7 | 6vyvE | 0.05 | 0.04 | 1.90 | 0.74 | MapAlign | | ---HFNVYKATRPYLAYCADCGDGYFCYSPV---------------------------AIEKIRDEAPDGMLKIQVTKIRYMAGHDVQESKR------DSLRVYTSAACSIHGTMGHFIVAHCPDYLKVSFEDQLTTAPTDEEIDMHTPPDIPDRTLLSQTAGNVKITAGGRTIRYNCTCGRDNVDVTYGKKEVTLRL- |
8 | 4k0mC | 0.11 | 0.10 | 3.48 | 0.79 | MUSTER | | RTAKFDETVEVHAKLGIDPRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------AAAAAAAAAAAAAAAAA-------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----- |
9 | 2xfbB | 0.17 | 0.15 | 4.96 | 0.42 | HHsearch | | RAGLFVRTSAPCFILARCPKGETLTVGFTDSSHSCTHPFDPVI-GREKFHSRPQAATTEEIEVHMPPDTPDR-TLMSQQ---SG---NVK----ITVNG--QTVRYKCNCGGSNEGLTKNNCKNHKKWQYNSVPRNAEGDRKG-KIHIPFPL-ANVTCRVPKARNPTVTYGKNQPDHPTLLSYRNMG-----EEPNYQE |
10 | 6s4qA | 0.06 | 0.06 | 2.56 | 0.49 | CEthreader | | ----------DQAGITGTWYNQLGSTFIVTAGADGALTGTYES----AVGNAESRYVLTGRYDSAPATDGSGTALGWTVANNYRNAHSATTWSGQYVGGAEARINTQWLLTSGTTEANAWASTLVGHDTFTKVKDQAGITGTWYNQLGSTFIVTAGADGALTGTYVTARGNAESRYVLTALGWTVAWKNNYRNAHSATT |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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