Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260
| | | | | | | | | | | | | |
| SS Seq | CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC MSAALFSLDGPARGAPWPAEPAPFYEPGRAGKPGRGAEPGALGEPGAAAPAMYDDESAIDFSAYIDSMAAVPTLELCHDELFADLFNSNHKAGGAGPLELLPGGPARPLGPGPAAPRLLKREPDWGDGDAPGSLLPAQVAACAQTVVSLAAAGQPTPPTSPEPPRSSPRQTPAPGPAREKSAGKRGPDRGSPEYRQRRERNNIAVRKSRDKAKRRNQEMQQKLVELSAENEKLHQRVEQLTRDLAGLRQFFKQLPSPPFLPAAGTADCR |
1 | 4btgA3 | 0.11 | 0.10 | 3.65 | 1.04 | SPARKS-K | | ----GFNLKVKDLNSARGLTQAFAI--GELKNQLSVGALQLPLQFTRTFSASMTSELLVSSVLTISPSTRLRNTNGI-DQLRSNLAQDMVKQRGRAEVIFSDEELSSTIIPWF-------IEAMSEVSPFKLRPINETTSYIGQT-SAIDHMGQPSHVVVYEDWQFAKEITAFTPVKLANNSNQRFLDVESDTVNSNGAEMTLGFPSVVERDYRDPMVAIAALRTGIVDESRASNDLKRSMFNYYAAVMHYAVAHNPEVVQGVAAEQGS |
2 | 5oqlF | 0.06 | 0.06 | 2.58 | 1.42 | MapAlign | | HVATMDWREGKLGCELQLVRDARFLHNNQFFAVAQKKYVYIYDHNGVEIHCLRKHVEVSHMEFLLATLSISGQLKYQDTSTGQIVAEIATKHGTPVSLTQNNAILHIGQQNGTVTLWSPNSTDPLVKLLAHRGPVRSLAVDREGRYMVSTGQMCIWDIRNFKEAVNSYFTRAPATSVAISDTGLTAVGWGTHTTERVRWCPFEDILGIGHNEGFSSIIVPGAGEANYDAVNPFETKKQRQEGEVKALLNKLQPEMIALDPNFI------ |
3 | 1h88B | 0.65 | 0.17 | 4.88 | 2.16 | HHsearch | | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE------------- |
4 | 5oqlF | 0.08 | 0.07 | 2.97 | 0.75 | CEthreader | | KYVYIYDHNGVEIHCLRKHVEVSHMEFLPYHFLLAKYQDTSTGQIVAEIATKHGTPVSLTQNPILHIGQQNGTVTLWSPNSTDPLVKLLAHRGPVRSLAVDREGRYMVSTGQDCIWDIRNFKEAVNSYFTRAPATSVAISDTGLTAVGWGTHTTIWKGLFNKERPVQVKVDSPYMTWGGQGQVVERVRWCPFEDILGIGHNEGFSS----IIVPGAGEANYDALEVNPFETKKQRQEGEVKALLNKLQPEMIALDPNFIGNL------- |
5 | 2tmaA | 0.04 | 0.04 | 2.02 | 0.72 | EigenThreader | | EQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKY------EEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSD----------------KLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKA |
6 | 1h88B | 0.65 | 0.17 | 4.88 | 0.67 | FFAS-3D | | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE------------- |
7 | 5yfpB | 0.07 | 0.07 | 2.73 | 1.00 | SPARKS-K | | SKIIHSQRLILQNNTNQDKVELSYYLKINQGKDSEGLKSTVEPNKVNTINLNCQPSS---------QGLTDSPTIIEMWLLILKYINDLLDGTYQNSIINEKRKENILIGDSNIIESYQ----KSLILKEEQINEVRLKGEEFITSVSQNLISFFTSSQ-------SSLPSSLKDSTGDITRSNKDSGSPLDYGFIPPNCNGLSCLRYLPKIVEPILKFSTELAQCRNTLSTIINRCVGAISSTKLRDIFYQLENWQVYETVTFSSKSQ |
8 | 1nwqA | 0.67 | 0.15 | 4.24 | 0.55 | CNFpred | | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NSNEYRVRRERNNIAVRKSRDKAKQRNVETQQKVLELTSDNDRLRKRVEQLSRELDTLRG-------------------- |
9 | 7dxjA | 0.08 | 0.06 | 2.20 | 0.67 | DEthreader | | VMS----------EIDFRLVFLAKAENLHRGA----HHY--------------------LLKLQERVLNNI----FYKCDGQADPVVGHYCFMAPYHFQLADAS-L---EMILVNTERVLIVFSRFLLQLGILLDIVKQLKV---EQQHTCQGHALVNREIRQ-REN-IHEQIPHCFIEV-PGEQLLVESLQSVLALGHNATP-AMVSHLPHMGFPCEARVA-VGEFLSNQS-SNFTQR------------------------------ |
10 | 4m5dA | 0.03 | 0.03 | 1.88 | 1.18 | MapAlign | | LEYSYFDNDPLLPILRKTKKQTESFVEATVLGRLWLQQRGFSSNMSHSGSLGGFGTFEFTILMAALLNGGGINSNKILLFKGVIKYLATMDLCHDGHLQFHSNPASKYILVTKGPAHSETMSTEAAVFKNFWGIKSSLRRFKDGSITHCCVGSAFRYTSLCQPVPFAYSDPDFFQDVILEFETSPKWPDEITSLEKAKTAFLLKGFLKVLKFISQTLAQYKGIQMNFTNLRLPIATRLTALAKVAVNLLQTHGLNQQTINLL------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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