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Template proteins with similar binding site:
Click to view | Rank | CscoreLB | PDB Hit | TM-score | RMSDa | IDENa | Cov. | BS-score | Lig. Name | Download Complex | Predicted binding site residues |
| 1 | 0.19 | 3fltA | 0.460 | 1.69 | 0.266 | 0.480 | 1.03 | OPE | complex1.pdb.gz | 266,276,277,292,355,357 |
| 2 | 0.18 | 3flpA | 0.460 | 1.67 | 0.266 | 0.480 | 1.00 | CA | complex2.pdb.gz | 276,277,356,357 |
| 3 | 0.17 | 1b09A | 0.444 | 2.08 | 0.265 | 0.471 | 0.86 | PC | complex3.pdb.gz | 277,355,357 |
| 4 | 0.05 | 3d5o4 | 0.445 | 1.97 | 0.261 | 0.469 | 1.08 | III | complex4.pdb.gz | 230,257,259,371,372,415,417,419,422 |
| 5 | 0.04 | 3d5o3 | 0.444 | 2.03 | 0.261 | 0.469 | 0.94 | III | complex5.pdb.gz | 299,320,321,322,326,385 |
| Click on the radio buttons to visualize predicted binding site and residues. |
(a) | CscoreLB is the confidence score of predicted binding site. CscoreLB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction. |
(b) | BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
| (c) | TM-score is a measure of global structural similarity between query and template protein. |
(d) | RMSDa the RMSD between residues that are structurally aligned by TM-align. |
(e) | IDENa is the percentage sequence identity in the structurally aligned region. |
(f) | Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein. |
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