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Template proteins with similar binding site:
Click to view | Rank | CscoreLB | PDB Hit | TM-score | RMSDa | IDENa | Cov. | BS-score | Lig. Name | Download Complex | Predicted binding site residues |
| 1 | 0.01 | 2c5wB | 0.439 | 4.90 | 0.063 | 0.744 | 0.10 | III | complex1.pdb.gz | 40,41,42 |
| 2 | 0.01 | 2c6wB | 0.439 | 4.98 | 0.047 | 0.750 | 0.13 | III | complex2.pdb.gz | 46,47,48,61,62 |
| 3 | 0.01 | 3nz4A | 0.466 | 4.78 | 0.082 | 0.776 | 0.17 | TCA | complex3.pdb.gz | 107,108,129 |
| 4 | 0.01 | 1qv1A | 0.470 | 5.13 | 0.060 | 0.853 | 0.22 | CZH | complex4.pdb.gz | 32,93,96,97,101,134,144 |
| 5 | 0.01 | 1ej3B | 0.450 | 5.48 | 0.065 | 0.878 | 0.10 | CZH | complex5.pdb.gz | 45,46,152 |
| 6 | 0.01 | 2zc5D | 0.440 | 4.82 | 0.063 | 0.744 | 0.14 | III | complex6.pdb.gz | 35,36,37,38,41,42,43,44,58 |
| Click on the radio buttons to visualize predicted binding site and residues. |
(a) | CscoreLB is the confidence score of predicted binding site. CscoreLB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction. |
(b) | BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
| (c) | TM-score is a measure of global structural similarity between query and template protein. |
(d) | RMSDa the RMSD between residues that are structurally aligned by TM-align. |
(e) | IDENa is the percentage sequence identity in the structurally aligned region. |
(f) | Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein. |
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