>P42166 (125 residues) SGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDLLDQLVKYGVNPGPIVGTT RKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDSDRYSDNEEGKKKEHKKVK STRDI |
Sequence |
20 40 60 80 100 120 | | | | | | SGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDSDRYSDNEEGKKKEHKKVKSTRDI |
Prediction | CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHCCCCCCCCCCC |
Confidence | 99876778877545545456899873101236644489899999999929999995842199999999999972666777888765553212122357875044431231233202577766789 |
H:Helix; S:Strand; C:Coil | |
Sequence |
20 40 60 80 100 120 | | | | | | SGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDSDRYSDNEEGKKKEHKKVKSTRDI |
Prediction | 84454655545454452455475455555442416503375025204726173221363035303520351376455465545444444645455554455354146647546464643665475 |
Values range from 0 (buried residue) to 8 (highly exposed residue) | |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | 20 40 60 80 100 120 | | | | | | | |||||||||||||
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SS Seq | CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHCCCCCCCCCCC SGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDSDRYSDNEEGKKKEHKKVKSTRDI | |||||||||||||||||||
1 | 1gjjA | 0.63 | 0.38 | 10.75 | 1.04 | SPARKS-K | ELVANNVTLPAGEQRKDVYVQLYLQHLTARNRDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQG-------------------------------------------------- | |||||||||||||
2 | 1jeiA | 0.34 | 0.14 | 4.31 | 2.90 | HHsearch | -------------------------------DNYADLSDTELTTLLRRYNIPHGPVVGSTRRLYEKKIFEYETQRRRLSP----PSSS------------------------------------- | |||||||||||||
3 | 3g1zA2 | 0.08 | 0.07 | 2.79 | 0.49 | CEthreader | -----------------ESLSYQQAFQRHLEIDPLSADKTQLREAAAKLDLSNIADTEEDRDTLLQLLFTMGVEPHIGKEKPTFIYHFPASQASLAQISTEDHRVAERFEVYYKGIELANGFH-- | |||||||||||||
4 | 2hp0A | 0.03 | 0.03 | 1.83 | 0.68 | EigenThreader | DGVIDTVAAALGGVTEHSVGSGDSKLWGVFDAAFVNGWHPTSTLNAWGIAASNSCGIIKHTGSAARNGVLSAWLSQSFTGCQTVFFGTPW----AIIAPGLYKKYANHKPLAGLFAIKEHGLTGQ | |||||||||||||
5 | 1gjjA | 0.91 | 0.34 | 9.66 | 0.82 | FFAS-3D | ----------------------------ARNRDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQG-------------------------------------------------- | |||||||||||||
6 | 1jeiA | 0.30 | 0.13 | 3.88 | 0.82 | SPARKS-K | -------------------------------DNYADLSDTELTTLLRRYNIPHGPVVGSTRRLYEKKIFEYETQRRRLSPPSSS----------------------------------------- | |||||||||||||
7 | 1gjjA | 1.00 | 0.34 | 9.63 | 0.82 | CNFpred | --------------------------------DVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQG-------------------------------------------------- | |||||||||||||
8 | 3javA | 0.05 | 0.04 | 1.96 | 0.83 | DEthreader | ----LTEDKKSEKKFYDKETLDGIDTALILNDI-LRLVLELKNNASKLLLA------GNGDGAASPRNVGHNIYILHQLAVPSICEF---KLRAQPVL-WCARNMSFWSSSFGLFVGNCGTRICM | |||||||||||||
9 | 4chdA | 0.05 | 0.04 | 1.82 | 0.71 | MapAlign | -------------------------PFSRAKSLLKSTIAERCKEFVGNMAKKLWHQCPRKRAKMSYLAIIAGSIQDRDKKQTNVPRAFMLQIEYDMKATRGLVVDTRIIVGGETVLRE------- | |||||||||||||
10 | 1gjjA | 0.64 | 0.38 | 10.74 | 0.93 | MUSTER | MPEFLEDPSVLTKDK-VANNVTLPAGEQRKDVDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQG-------------------------------------------------- | |||||||||||||
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Top 10 structural analogs in PDB (as identified by
TM-align)
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Top 5 enzyme homologs in PDB
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Template proteins with similar binding site:
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References: | |
1. | Wei Zheng, Chengxin Zhang, Yang Li, Robin Pearce, Eric W. Bell, Yang Zhang. Folding non-homology proteins by coupling deep-learning contact maps with I-TASSER assembly simulations. In preparation, 2020. |