Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| SS Seq | CCCCSSSSSSSSCCCCCCSSSSSSCCCCCHHHCCSSSSCCCCSSSSSSSCCCCSSSSSSHHHHHHHHHHCCCCSSSSSSSHHHHCCCSSSCCCCCCCCCCCCCSSSSSCCCCCCCCCCCCSSSCCCCCCHHHHHHHHHHCCCCCCCCCCCCSCCCCSSCCCCCCCCCSSSCCCCHHHHHHHHHCCCSSSCCSSSCC VQDPSVFVTFPLEEDETVSLVAWTTTPWTLPSNLAVCVNPEMQYVKIKDVARGRLLILMEARLSALYKLESDYEILERFPGAYLKGKKYRPLFDYFLKCKENGAFTVLVDNYVKEEEGTGVVHQAPYFGAEDYRVCMDFNIIRKDSLPVCPVDASGCFTTEVTDFAGQYVKDADKSIIRTLKEQGRLLVATTFTHS |
1 | 7d5cA1 | 0.48 | 0.48 | 14.09 | 1.50 | DEthreader | | VNDPAVTIGFNVIGQEKTQLVAWTTTPWTLPSNLSLCVNADFEYVKIYDETRDRYFILLESLIKTLYKKPEKYKIVEKIKGSDLVGLKYEPLFPYFAEQFHETAFRVISDDYVTSDSGTGIVHNAPAFGEEDNAACLKNGVISEDSVLPNAIDDLGRFTKDVPDFEGVYVKDADKLIIKYLTNTGNLLLASQIRHS |
2 | 6ldkA1 | 0.46 | 0.45 | 13.25 | 3.76 | SPARKS-K | | VNDPALTISFPLLDNEDTCLVAWTTTPWTLPANLALAVNPKFEYVKIFDEEKKKNFILLESLISTLYKKPAKFKVVEKILGKDLVGLKYKPLFNYFYEDFKDTGFRVIPADYVTNDSGTGIVHQAPSYGEEDFNSTKAAGV-INKKLPPSIVDDSGRMESNVPEIAGMYFKDADKVIIKKLSEEGRLLVNTQVKH- |
3 | 6ldkA | 0.46 | 0.46 | 13.39 | 1.39 | MapAlign | | VNDPALTISFPLLDNEDTCLVAWTTTPWTLPANLALAVNPKFEYVKIFDEEKKKNFILLESLISTLYPKSAKFKVVEKILGKDLVGLKYKPLFNYFYEDFKDTGFRVIPADYVTNDSGTGIVHQAPSYGEEDFNSTKAAGVI-NKKLPPSIVDDSGRMESNVPEIAGMYFKDADKVIIKKLSEEGRLLVNTQVKHS |
4 | 6ldkA | 0.47 | 0.47 | 13.67 | 1.08 | CEthreader | | VNDPALTISFPLLDNEDTCLVAWTTTPWTLPANLALAVNPKFEYVKIFDEEKKKNFILLESLISTLYKKPAKFKVVEKILGKDLVGLKYKPLFNYFYEDFKDTGFRVIPADYVTNDSGTGIVHQAPSYGEEDFNSTKAAGVINKK-LPPSIVDDSGRMESNVPEIAGMYFKDADKVIIKKLSEEGRLLVNTQVKHS |
5 | 1jzsA1 | 0.40 | 0.37 | 10.98 | 2.08 | MUSTER | | IQDPSVYVRFPLKEPEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQV--GDEALILEEGLGRKLLG--EGTQVLKTFPGKALEGLPYTPPYPQ----ALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGL-----PLLKTVDEEGKLL--VEPFKGLYFREANRAILRDLRGRGLLFKEESYLHS |
6 | 6ldkA1 | 0.46 | 0.44 | 12.95 | 2.41 | HHsearch | | VNDPALTISFPLLDNEDTCLVAWTTTPWTLPANLALAVNPKFEYVKIFDEEKKKNFILLESLISTLYKKPAKFKVVEKILGKDLVGLKYKPLFNYFYEDFKDTGFRVIPADYVTNDSGTGIVHQAPSYGEEDFNSTKAAGVLP-----PSIVDDSGRMESNVPEIAGMYFKDADKVIIKKLSEEGRLLVNTQVKH- |
7 | 6ldkA1 | 0.46 | 0.46 | 13.39 | 2.76 | FFAS-3D | | VNDPALTISFPLLDNEDTCLVAWTTTPWTLPANLALAVNPKFEYVKIFDEEKKKNFILLESLISTLYKKSAKFKVVEKILGKDLVGLKYKPLFNYFYEDFKDTGFRVIPADYVTNDSGTGIVHQAPSYGEEDFNSTKAAGVINKKL-PPSIVDDSGRMESNVPEIAGMYFKDADKVIIKKLSEEGRLLVNTQVKH- |
8 | 7d5cA1 | 0.47 | 0.47 | 13.81 | 1.78 | EigenThreader | | NNDPAVTIGFNVIGQEKTQLVAWTTTPWTLPSNLSLCVNADFEYVKIYDETRDRYFILLESLIKTLYKKPKNEKIVEKIKGSDLVGLKYEPLFPYFAEQFHETAFRVISDDYVTSDSGTGIVHNAPAFGEEDNAACLKNGVISEDSVLPNAIDDLGRFTKDVPDFEGVYVKDADKLIIKYLTNTGNLLLASQIRHS |
9 | 1ileA | 0.41 | 0.38 | 11.12 | 3.33 | CNFpred | | IQDPSVYVRFPLKEPEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVG--DEALILEEGLGRKLLGE--GTQVLKTFPGKALEGLPYTPPYPQALE----KGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLL-----KTVDEEGKLL--VEPFKGLYFREANRAILRDLRGRGLLFKEESYLHS |
10 | 7d5cA | 0.48 | 0.48 | 14.09 | 1.50 | DEthreader | | VNDPAVTIGFNVIGQEKTQLVAWTTTPWTLPSNLSLCVNADFEYVKIYDETRDRYFILLESLIKTLYKKPEKYKIVEKIKGSDLVGLKYEPLFPYFAEQFHETAFRVISDDYVTSDSGTGIVHNAPAFGEEDNAACLKNGVISEDSVLPNAIDDLGRFTKDVPDFEGVYVKDADKLIIKYLTNTGNLLLASQIRHS |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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