>P40238 (142 residues) LVTALHLVLGLSAVLGLLLLRWQFPAHYRRLRHALWPSLPDLHRVLGQYLRDTAALSPPK ATVSDTCEEVEPSLLEILPKSSERTPLPLCSSQAQMDYRRLQPSCLGTMPLSVCPPMAES GSCCTTHIANHSYLPLSYWQQP |
Sequence |
20 40 60 80 100 120 140 | | | | | | | LVTALHLVLGLSAVLGLLLLRWQFPAHYRRLRHALWPSLPDLHRVLGQYLRDTAALSPPKATVSDTCEEVEPSLLEILPKSSERTPLPLCSSQAQMDYRRLQPSCLGTMPLSVCPPMAESGSCCTTHIANHSYLPLSYWQQP |
Prediction | CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC |
Confidence | 9303578887899999998751361789999999789985054666545115766799963225774335742443136888889888889888899898896446887654488766788864222455542235456799 |
H:Helix; S:Strand; C:Coil | |
Sequence |
20 40 60 80 100 120 140 | | | | | | | LVTALHLVLGLSAVLGLLLLRWQFPAHYRRLRHALWPSLPDLHRVLGQYLRDTAALSPPKATVSDTCEEVEPSLLEILPKSSERTPLPLCSSQAQMDYRRLQPSCLGTMPLSVCPPMAESGSCCTTHIANHSYLPLSYWQQP |
Prediction | 6321022213333221111122423521440364132413404420442143455445242425533662441014113534764535346564645374345522433314233433644432333145323121322658 |
Values range from 0 (buried residue) to 8 (highly exposed residue) | |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | 20 40 60 80 100 120 140 | | | | | | | | |||||||||||||
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SS Seq | CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC LVTALHLVLGLSAVLGLLLLRWQFPAHYRRLRHALWPSLPDLHRVLGQYLRDTAALSPPKATVSDTCEEVEPSLLEILPKSSERTPLPLCSSQAQMDYRRLQPSCLGTMPLSVCPPMAESGSCCTTHIANHSYLPLSYWQQP | |||||||||||||||||||
1 | 4mt1A | 0.11 | 0.11 | 3.85 | 0.43 | CEthreader | AFLALTLTPALCATGFFGWFNKKFDSWTHGYEGRVAKVLRKTFRMMVVYIGLAVVGVFLFMRLPTSFLPTEDQGFVMVSVQLPAGATKERTDATLAQVTQLAKSIPEIENIITVSGFSFSGSGQNMAMGFAIFKDWNERTAS | |||||||||||||
2 | 2yl4A1 | 0.08 | 0.08 | 3.09 | 0.48 | EigenThreader | YSDNLTRLCLGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWEL | |||||||||||||
3 | 3sokA | 0.08 | 0.08 | 3.07 | 0.44 | FFAS-3D | TLIELMIVVAIIGILAAFAIPAYNDYIARSQAAEGLTLADGLKVRISDHLESGECKGDANPASGSLGNDDKGKYALATIDGDYNKDAKTADEKNGCKVITYGQGTAGEKISKLIVGKKVNGSEGETDLEL-KFIPNAVKN-- | |||||||||||||
4 | 6rimA | 0.09 | 0.08 | 3.21 | 0.78 | SPARKS-K | TREFLGESLDSQKSDYFEGIKKVFSFYKNKCNES---------RYIKEFFEEIQFRNIPKQTSSTDIFD-QFNSVDVLLQDPVTSVWNKKVGSKKANIVIIPPNLPITEACATAGFQPEGFPSGSFFTVQFDPFFSTRFKAH | |||||||||||||
5 | 4xmmE | 0.08 | 0.03 | 1.13 | 0.60 | CNFpred | --DGFTSIISLESLHQLLSIHYRITLQVLLTFVLFDLDTEIFGQHISTLLDLHY---------------------------------------------------------------------------------------- | |||||||||||||
6 | 5glhA | 0.07 | 0.05 | 2.02 | 0.83 | DEthreader | KDWWLFSFFCLPLAITAFFYTLMTCEMLRKNIFEMLRDE-------------------------------------------TKDAELFQDDAAVRIRAALILLQQKRDEAAVNLAKS-RWYNQTPRAKRVITFTGTWLLKQ | |||||||||||||
7 | 2hqmA | 0.08 | 0.08 | 3.09 | 0.82 | MapAlign | EFKQKRDAYVHRLNGIYQKNLEKNTITDHYVKEELTPVAIAAGRKLSNRLFGPEKFRNDKLDYENVPSVIFSHPEAGSIGISEKEAIEKYGKENIKVYNSKFTALSEKSPTRYKIVCAGPNEKVVGLHIVGDSSAEILQGFG | |||||||||||||
8 | 3zc4A | 0.10 | 0.10 | 3.62 | 0.64 | MUSTER | -PVAETISKRFWTLIKLRFYVVL-FGYIDPLIYSIDPQIKDLSEALREFVSYTSSSSSRSIVIYDDPKNPVTAQAPCLVVAKRDEIPQNFPSIYRYTIYKIDKSSEYCISPLVVNDKYATLITPNESVIKE----FDKLDSN | |||||||||||||
9 | 6e2qN | 0.17 | 0.06 | 1.86 | 2.09 | HHsearch | -------------------------------KQKIWPGIPSPESEFEGLFTTHNFQLWLWWSPCTPFTEDPPASLEVLS--------------------------------------------------------------- | |||||||||||||
10 | 4kpuA1 | 0.08 | 0.08 | 3.08 | 0.41 | CEthreader | YELLGECRKLADKCNQKLAAVLITDDAKDVPSKLIARGADLVYVCQDPAFKYYSTDEYTNA-FCEMIDEYQPSSVFIGATNDGRDLGPRIAARVNTDCTILDAEEDGLIEWTRPAAGGNIMATILCKEHRPQMGTVRPKTFK | |||||||||||||
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Top 10 structural analogs in PDB (as identified by
TM-align)
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Top 5 enzyme homologs in PDB
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Template proteins with similar binding site:
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References: | |
1. | Wei Zheng, Chengxin Zhang, Yang Li, Robin Pearce, Eric W. Bell, Yang Zhang. Folding non-homology proteins by coupling deep-learning contact maps with I-TASSER assembly simulations. In preparation, 2020. |