Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140
| | | | | | | |
| SS Seq | CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCSCCCCCCCCCCSSSSSCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SMPYTQNFISCNQPVLPQHSKCTELDYPMGSFEPSPYPTTSSLEDFVTCLQLPENQKHGLNPQSAIITPQTCYAGAVSMYQCQPEPQHTHVGQMQYNPVLPGQQAFLNKFQNGVLNETYPAELNNINNTQTTTHLQPLHHPSEARPFPDLTSSGFL |
1 | 5lj3W | 0.14 | 0.13 | 4.40 | 1.04 | SPARKS-K | | -MKFTPSIVDAPQYYVDHFNGKYNVDKCVIQLETDSESMPSSLKHLTHILDLTNND---LIMIPDLSRRDDIHTLLLGRNNIVEVDGRLLPMNVQ---NLTLSNNSIRRFEDLQRLRRAPRTLKNLTCHLANYREHVLRLVPH---LETLDFQNVT |
2 | 2pffB | 0.20 | 0.19 | 5.96 | 1.01 | HHsearch | | TDDYEKVFTQGNILWLENPSNTPDKDYLLSMLSISNLTQ-EQVQDYVNHLPGKQVEISLVNGAKNLVPPQSLYGLNLTLRK---AKAPSGLDQSRI-PFSERKL----KFSNRVASLLVPASKNNVSFNAKDIQI-PVYDTSDLRVLSGSISERIV |
3 | 6yp6A | 0.06 | 0.06 | 2.53 | 0.46 | CEthreader | | -----GVTTLLSYLASESEGSLKVQGWSASGGRAEVVSDAEGTGGKAVKLTKEAGKSSWVLEYAAVSGALAANQYVMAFYWPVSSDGGNNLLAAFYIQTDAKDLNVMYHNAKVATNNLKLGTFGAFDNEWHTLAFRAGNNSLQVTPVIDGQDGTPF |
4 | 7jm6A | 0.03 | 0.03 | 1.87 | 0.63 | EigenThreader | | WATLNASVVMVGSVIVAFIEPVAAGSGKEGPMIHSGAVIAAGISQGGAAAGVSAAFGAPVGGVLFSIFFASMISTFTLNSVLSVYHGNAWDLSSPGLINTYGLTGVFIPSLLIGAAWGRLFGISLSYLSKGSIWADPGKYALMGAAAQLGGIVRMT |
5 | 3tb8A | 0.16 | 0.15 | 5.14 | 0.38 | FFAS-3D | | SKSSVIGWPAVRERMRRAEPAADGVGAASRDLEKHGAITSSNTAANNAALEAQEEEKVGFPVTPQVPLRPMTYKAAVDLSHFLKEKGHSQRRQDILDLWIYHTQGYFPDWQNGWCYKLVPVEPDKVEEANKGEN-TSLLHPVSLHGMDDPEREVL- |
6 | 6emkG | 0.10 | 0.09 | 3.37 | 0.94 | SPARKS-K | | ----SSLHYASYHGRYLICVYLIQLGHDKHELIKTFKGNTCVHKGHEQTLHLLQQFPRFINHRGENGRAPIHIACMNDYYQCLSLLIGVGADL---WVMDTNGDTPLHVCLEYGSISCMKMLLNEGDNVRDKGNWKPIDVAQTFEVYSKVLKEV-- |
7 | 6z0vA | 0.22 | 0.05 | 1.62 | 0.29 | CNFpred | | -----------------------------------------KIGDLQAVMAVPDTET----PTFCLHTDVSCRQRDVAIYQD-------------------------------------------------------------------------- |
8 | 4av3A | 0.04 | 0.03 | 1.71 | 0.83 | DEthreader | | MSAGIMATRNVAERTTKKIGPALKVAYQGSVGLVGACS-AMDRGGDVAGG-----ILVIPELNSLSFVSVSVDSYGPIANAGSCELDPERKITDLDGNTTAIGKGFAI----LITASGGAWDNAKKY-----EA-KHKLVIGDVGDKD-------- |
9 | 1vt4I3 | 0.05 | 0.04 | 2.16 | 0.76 | MapAlign | | ------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG |
10 | 4fsxA3 | 0.14 | 0.13 | 4.62 | 0.66 | MUSTER | | SVLPKYPLPTYDVVVRGGAPNAFSQCVAYDETQKPSLKKALLLGDAISDL--PKVQNHQPNDVEYGGSPKTEFLSRKDLDWSFGEGAGPDEGKLLDHQPLRLNNDDYERVQGANFRDLKGVRVGANNIVEWDPEIERVKLSSGKPLVPDYASGKSL |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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