Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300
| | | | | | | | | | | | | | | |
| SS Seq | CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCSSSSSHHHHHHHCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCSSSSSSCCCCCCCCCCCCCCHHHCCCSSSSSSSSSSCCCCSSSSSSSSSSSCCCCCSSSSSSCCCSSCCCCCCCCCCCCCCCCCCSSSSSCCCCSSSSSSSSSSSCCCCCCCCCCCCCSSSSSSCCCCCCCCCCCCSSSSSSSSSSCCCCCCCCCCCCCSSSSSSSSSSSSSCCCCC MALKDYALEKEKVKKFLQEFYQDDELGKKQFKYGNQLVRLAHREQVALYVDLDDVAEDDPELVDSICENARRYAKLFADAVQELLPQYKEREVVNKDVLDVYIEHRLMMEQRSRDPGMVRSPQNQYPAELMRRFELYFQGPSSNKPRVIREVRADSVGKLVTVRGIVTRVSEVKPKMVVATYTCDQCGAETYQPIQSPTFMPLIMCPSQECQTNRSGGRLYLQTRGSRFIKFQEMKMQEHSDQVPVGNIPRSITVLVEGENTRIAQPGDHVSVTGIFLPILRTGFRQVVQGLLSETYLEAHRIVKMNKSE |
1 | 3ja87 | 0.41 | 0.39 | 11.58 | 1.33 | DEthreader | | QLPVDYNNLFNEITDFLVTFKQD----K-GPKYMAMLQKVANRELNSVIIDLDDILQYQDDLVSAIQQNANHFTELFCRAIDNNM--PL-PTK-EIDVLNQRRLRNERMLSDRTNERLRVEDTELFPPNLTRRYFLYFKPLSQSKPLSVRQIKGDFLGQLITVRGIITRVSDVKPAVEVIAYTCDQCGYEVFQEVNSRTFTPLSECTSEECSQNQTKGQLFMSTRASKFSAFQECKIQELSQQVPVGHIPRSLNIHVNGTLVRSLSPGDIVDVTGIFLPAPYT----KALKGLTETYLEAQFVRQHKKSP |
2 | 4pofA | 0.27 | 0.22 | 6.74 | 3.09 | SPARKS-K | | --SVDREEMIERFANFLREYTDEDGN----PVYRGKITDLLTTPKRSVAIDWMHLNSFDSELAHEVIENPEEGISAAEDAIQIVLREDFQREDVGK-------------------------------------IHARFYNLP--ETLMVKDIGAEHINKLIQVEGIVTRVGEIKPFVSVAVFVCKDCGHEMIVPQKPESLEKVKKCEQCGSKN------IELDVNKSSFVNFQSFRIQDRPETLKGGEMPRFIDGILLDDIVDVALPGDRVIVTGILRVVLEKRE----KTPIFRKILEVNHIEPVSK-- |
3 | 4pofA | 0.26 | 0.21 | 6.48 | 1.32 | MapAlign | | --SVDREEMIERFANFLREYTD----EDGNPVYRGKITDLLITPKRSVAIDWMHLNSFDSELAHEVIENPEEGISAAEDAIQIVLREDF-------------------------------------QREDVGKIHARFYNLP--ETLMVKDIGAEHINKLIQVEGIVTRVGEIKPFVSVAVFVCKDCGHEMIVPQPYESLEKVKKCEQ--CG----SKNIELDVNKSSFVNFQSFRIQDRPETLKGGEMPRFIDGILLDDIVDVALPGDRVIVTGILRVVLE----KREKTPIFRKILEVNHIEPVSK-- |
4 | 3ja87 | 0.42 | 0.42 | 12.22 | 0.84 | CEthreader | | QLPVDYNNLFNEITDFLVTFKQ-----DKGPKYMAMLQKVANRELNSVIIDLDDILQYQDDLVSAIQQNANHFTELFCRAIDNNMPLPTKEIDYKDDVLDVILNQRRLRNERMLSDEVVEDETELFPPNLTRRYFLYFKPLISSKPLSVRQIKGDFLGQLITVRGIITRVSDVKPAVEVIAYTCDQCGYEVFQEVNSRTFTPLSECTSEECSQNQTKGQLFMSTRASKFSAFQECKIQELSQQVPVGHIPRSLNIHVNGTLVRSLSPGDIVDVTGIFLPAPYTGFKALKAGLLTETYLEAQFVRQHKKKF |
5 | 6raw7 | 0.62 | 0.58 | 16.62 | 2.21 | MUSTER | | --RRDYAQDRESIKTFLSEFCKCDDDGKKEFVYGSQLVKLAHREQVLITIDLDDLAEFNESLAEAVVDNCRRYTSIFSDVIAELL----PSEVHAKDALDVYIEHRLMMEN-------------SFPSELMKRFEVGFKPLSTEKAHSIREVKAQHIGKLVTVRGIVTRCTEVKPMMVVATYTCDRCGSETYQPVNSLSFTPVHDCPSDDCRVNKAGGRLYLQTRGSKFVKFQEVKMQEHSDQVPVGHIPRSMTIMCRGEVTRMAQPGDHIVVSGVFLPLMRTGFAQMIQGLLSETFLQAHRIICINKND |
6 | 3ja871 | 0.43 | 0.42 | 12.21 | 2.68 | HHsearch | | QLPVDYNNLFNEITDFLVTFKQD-----KGPKYMAMLQKVANRELNSVIIDLDDILQYQDDLVSAIQQNANHFTELFCRAIDNNMPLPTKEIDYKDDVLDVILNQRRLRNERMLSREVVEDETELFPPNLTRRYFLYFKPLSQSKPLSVRQIKGDFLGQLITVRGIITRVSDVKPAVEVIAYTCDQCGYEVFQEVNSRTFTPLSECTSEECSQNQTKGQLFMSTRASKFSAFQECKIQELSQQVPVGHIPRSLNIHVNGTLVRSLSPGDIVDVTGIFLPAPYTGFKALKAGLLTETYLEAQFVRQH---- |
7 | 3ja821 | 0.22 | 0.18 | 5.80 | 2.93 | FFAS-3D | | --PNVSRTIARELKSFLLEYTDE----TGRSVYGARIRTLGEMNSESLEVNYRHLAESKAILALFLAKCPEEMLKIFDLVAMEATELH-------------------------------------YPDYARIHSEIHVRISDFPTIYSLRELRESNLSSLVRVTGVVTRRTGVFPQLKYVKFNCLKCGSILGPFFQDSNEEI----RISFCTNCKSKGPFRVNGEKTVYRNYQRVTLQEAPGTVPPGRLPRHREVILLADLVDVSKPGEEVEVTGIYKNNYDGNLNAKNGFPVFATIIEANSIKRRE--- |
8 | 3ja871 | 0.38 | 0.36 | 10.70 | 1.78 | EigenThreader | | QLPVDYNNLFNEITDFL-----VTFKQDKGPKYMAMLQKVANRELNSVIIDLDDILQYQNEKFSAIQQNANHFTELFCRAIDNNMPLPTKEIDYKDDVRMLSDRTNEIRSEN-----LMNDALREVVEDETERYFLYFKPLISSKPLSVRQIKGDFLGQLITVRGIITR--VSDVKVEVIAYTCDQCGYEVFQEVNSRTFTPLSECTSEECSQNQTKGQLFMSTRASKFSAFQECKIQELSQQVPVGHIPRSLNIHVNGTLVRSLSPGDIVDVTGIFLPAPYTGFKALKAGLLTETYLEAQFVRQH---- |
9 | 4pofA | 0.26 | 0.21 | 6.56 | 2.45 | CNFpred | | --SVDREEMIERFANFLREYTDED----GNPVYRGKITDLLTTPKRSVAIDWMHLNSFDSELAHEVIENPEEGISAAEDAIQIVLREDFQRE-------------------------------------DVGKIHARFYNL--PETLMVKDIGAEHINKLIQVEGIVTRVGEIKPFVSVAVFVCKDCGHEMIVPQKPESLEKVKKCEQCGSK------NIELDVNKSSFVNFQSFRIQDRPETLKGGEMPRFIDGILLDDIVDVALPGDRVIVTGILRVVLEK----REKTPIFRKILEVNHIEPVSK-- |
10 | 3ja871 | 0.41 | 0.39 | 11.40 | 1.33 | DEthreader | | QLPVDYNNLFNEITDFLVTFKQD----K-GPKYMAMLQKVANRELNSVIIDLDDILQYQDDLVSAIQQNANHFTELFCRAIDNNM--PL-PTK-EIDVLNQRRLRNERMLSDRTNERLRVEDTELFPPNLTRRYFLYFKPLSQSKPLSVRQIKGDFLGQLITVRGIITRVSDVKPAVEVIAYTCDQCGYEVFQEVNSRTFTPLSECTSEECSQNQTKGQLFMSTRASKFSAFQECKIQELSQQVPVGHIPRSLNIHVNGTLVRSLSPGDIVDVTGIFLPAPYT----KALKGLTETYLEAQFVRQH---- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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