Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Download alignment | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| SS Seq | CCCCCCCSSSSSSSSCCCCCCCSSSSSSCCCCCCCSSSSSSSSSSSCHHHHHHHCCCCCCCCCCSSCCCCSSSSSSSSCCCCCCCCCCCSSSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSCCCCCCSSSSCCSSSSSCCCCCCCCCCSSSCHHHCSC MSTTGQVIRCKAAILWKPGAPFSIEEVEVAPPKAKEVRIKVVATGLCGTEMKVLGSKHLDLLYPTILGHEGAGIVESIGEGVSTVKPGDKVITLFLPQCGECTSCLNSEGNFCIQFKQSKTQLMSDGTSRFTCKGKSIYHFGNTSTFCEYTVIKEISVAK |
1 | 1cdoA | 0.49 | 0.48 | 13.97 | 1.33 | DEthreader | | --TVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLF-EGKHKGFPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAK |
2 | 7aasA1 | 0.51 | 0.51 | 14.67 | 2.59 | SPARKS-K | | SETAGKPIECKAAIAWEAKKPLEVRTVTVAPPGPGEVRVQIKATALCQTDAYTLGGLDPEGRFPCILGHEAAGVVESVGEGVTSVKPGDHVIPCYQAYCGECKFCKHPESNLCVSVFTGKGVMKSDGKPRFTVDGKPIYHFMGTSTFSEYTVVHEQSVAK |
3 | 5tnxA | 0.37 | 0.35 | 10.40 | 0.68 | MapAlign | | ------TRAVTAAVARAAGAPFSIEPARIRAPRGDEVLVRVVATGLCHTDLIVRDQYY-PVPLPAVLGHEGAGVVEAVGPNVKTLAAGDHVVLT-YGACGHCASCAGGHGAYCRQFFALFGGADADGQTALRDAGEPLDHFFAQSSFASYALARENNAIK |
4 | 1p0fA1 | 0.57 | 0.56 | 16.18 | 0.46 | CEthreader | | -CTAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIP-SKFPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGKTGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAK |
5 | 1axeA1 | 0.63 | 0.62 | 17.86 | 2.42 | MUSTER | | -STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLV-TPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLWTPQCGKCRVCKHPEGNFCLKNDLSPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAK |
6 | 7aasA | 0.51 | 0.51 | 14.67 | 1.10 | HHsearch | | SETAGKPIECKAAIAWEAKKPLEVRTVTVAPPGPGEVRVQIKATALCQTDAYTLGGLDPEGRFPCILGHEAAGVVESVGEGVTSVKPGDHVIPCYQAYCGECKFCKHPESNLCVSVRAFGKGVMSDGKPRFTVDGKPIYHFMGTSTFSEYTVVHEQSVAK |
7 | 7aasA1 | 0.50 | 0.50 | 14.50 | 2.26 | FFAS-3D | | SETAGKPIECKAAIAWEAKKPLEVRTVTVAPPGPGEVRVQIKATALCQTDAYTLGGLDPEGRFPCILGHEAAGVVESVGEGVTSVKPGDHVIPCYQAYCGECKFCKHPESNLCVSVRAFTGKMKSDGKPRFTVDGKPIYHFMGTSTFSEYTVVHEQSVAK |
8 | 3cosD1 | 0.59 | 0.59 | 17.03 | 1.00 | EigenThreader | | MGTKGKVIKCKAAIAWEAGKPLCIEEVEVAPPKAHEVRIQIIATSLCHTDATVIDSKFEGLAFPVIVGHEAAGIVESIGPGVTNVKPGDKVIPLYAPLCRKCKFCLSPLTNLCGKISASDQQLMEDKTSRFTCKGKPVYHFFGTSTFSQYTVVSDINLAK |
9 | 1adbA | 0.63 | 0.62 | 17.86 | 3.18 | CNFpred | | -STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTL-VTPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAK |
10 | 1cdoA1 | 0.49 | 0.48 | 13.97 | 1.33 | DEthreader | | --TVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLF-EGKHKGFPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAK |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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