>P28328 (229 residues) MASRKENAKSANRVLRISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKACL WVFLWRFTIYSKNATVGQSVLNIKYKNDFSPNLRYQPPSKNQKIWYAVCTIGGRWLEERC YDLFRNHHLASFGKVKQCVNFVIGLLKLGGLINFLIFLQRGKFATLTERLLGIHSVFCKP QNICEVGFEYMNRELLWHGFAEFLIFLLPLINVQKLKAKLSSWCIPLTG |
Sequence |
20 40 60 80 100 120 140 160 180 200 220 | | | | | | | | | | | MASRKENAKSANRVLRISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKACLWVFLWRFTIYSKNATVGQSVLNIKYKNDFSPNLRYQPPSKNQKIWYAVCTIGGRWLEERCYDLFRNHHLASFGKVKQCVNFVIGLLKLGGLINFLIFLQRGKFATLTERLLGIHSVFCKPQNICEVGFEYMNRELLWHGFAEFLIFLLPLINVQKLKAKLSSWCIPLTG |
Prediction | CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCSSSCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCSSSCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC |
Confidence | 9988899998776554378759999999999999999999997085025555599999999999996506999983378729375426566555676416899999999999999999999999737841578999999999999999999999999971988889999766655327888766355113668999999999999999862499999999998523479 |
H:Helix; S:Strand; C:Coil | |
Sequence |
20 40 60 80 100 120 140 160 180 200 220 | | | | | | | | | | | MASRKENAKSANRVLRISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKACLWVFLWRFTIYSKNATVGQSVLNIKYKNDFSPNLRYQPPSKNQKIWYAVCTIGGRWLEERCYDLFRNHHLASFGKVKQCVNFVIGLLKLGGLINFLIFLQRGKFATLTERLLGIHSVFCKPQNICEVGFEYMNRELLWHGFAEFLIFLLPLINVQKLKAKLSSWCIPLTG |
Prediction | 8264666354433021001100430262025103530350053045423540330020003100010023453322032024031325345444444343211000001200142014204420464635434303300420330130011300120034041320020002023233444343413143121111110122321330031224301420441144368 |
Values range from 0 (buried residue) to 8 (highly exposed residue) | |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | 20 40 60 80 100 120 140 160 180 200 220 | | | | | | | | | | | | |||||||||||||
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SS Seq | CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCSSSCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCSSSCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC MASRKENAKSANRVLRISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKACLWVFLWRFTIYSKNATVGQSVLNIKYKNDFSPNLRYQPPSKNQKIWYAVCTIGGRWLEERCYDLFRNHHLASFGKVKQCVNFVIGLLKLGGLINFLIFLQRGKFATLTERLLGIHSVFCKPQNICEVGFEYMNRELLWHGFAEFLIFLLPLINVQKLKAKLSSWCIPLTG | |||||||||||||||||||
1 | 3wjkA | 0.04 | 0.04 | 1.93 | 0.49 | CEthreader | HDDVVDESDMRRGKATANAAFGNAASVLVGDFIYTRAFQMMTSLGSLKVLEVMSEAVNVIAEGEVLQ-----------------------------LMITEENYMRVIYSKTARLFEAAAQCSGILCTPEEEKGLQDYGRYLGTAFQLIDDLLDYNANVGDDLNEGKPTLPLLHAMHHGTPEQAQMIRTAIEQGNGRHLLEPVLEAMNACGSLEWTRQRAEEEADKAIA | |||||||||||||
2 | 2axtA | 0.06 | 0.05 | 2.12 | 0.65 | EigenThreader | ------------SANLWERFCNWVT---------------STDNRLYVGWFGVIMIPTLLAATICFVIAFIAAPPVDIDGIEPVSGSLLNNIITGAVVPSEWLYNGGPYQLIIFHFLLGASCYMGRQWELSYRLCVAYSAPLASAFAVFLIYPIGQG----SFSDG------MPLG----ISGTFNFMIVFQAEHNFHQLGVAGVFGGALFCAMHGSLVTSSLIRETTE | |||||||||||||
3 | 5v6pA2 | 0.08 | 0.06 | 2.42 | 0.74 | FFAS-3D | ---------------ELRLIEHEHIFERLPFTIINTLF-MSSLFHERYFFTVAFFGLLLLYLKVFHWILK-------DRLEALLQSINDSTTMKTLIFSRFSFNLVLLAVVDYQIITRCISSIYTNQKSDIESTSLYLIQVMEFTMLLIDLLNLFL-----------QTCLNF--------------WEFYRSKFMYEKAIDVFTRFLKTADILALYQSGTSLWK---- | |||||||||||||
4 | 6w2rA | 0.09 | 0.07 | 2.86 | 0.74 | SPARKS-K | ------------GTTEDERRELEKVARKAIEAAREQLQRALEIARESTKTAVKLALDVALRVAQEAAKRGNKDAIAAEVVVRIAEESNN------------SDALEQALRVLEEIAKAVLKSEKTEDAKKAVKLVQEAYKAAQRAIEAAKRTKLAIKLAKLAARAALEVIKR-----PKSE---EVNEALKKIVKAIQEAVESLREAEESEKREKARERVREAVERAEE | |||||||||||||
5 | 3w3tA | 0.09 | 0.07 | 2.83 | 0.78 | CNFpred | ---------------FAAMMALSSAAEGCADVLIGEIPKILDMVIPLINDP-HPRVQYGCCNVLGQISTDFSQRTAHDRILPALISKL----------ECTSRVQTHAAAALVNFSEFASKDILEPYLDSLLTNLLVLLQSLYVQEQALTTIAFIAEAAKNKFIKYYDTLMPLL-------------LNVLK-SVLKGKCMECATLIGFAVGKEKFHEHSQELISILVA | |||||||||||||
6 | 6z16A | 0.04 | 0.04 | 1.94 | 0.83 | DEthreader | -----LH-GWLYSIYLLFYYLLLFMAMTSSTMFGGLLMLGGVA-PLFIPALVILFGAFTKSAPFYIWLP----DAM-EAPTPS---LASK--QTDLKA---ILAYSTVSQLGLITSLLGIGGLSFHYDGMGENVFM-VAVLAAIFHLFNHATFKGSLVITIAGSSMAFTFYSLLVT---VLKKAHEAP-FGM-LIAPIVLASLVVFIVPNVLS-VHISHWHG-FTPEFM | |||||||||||||
7 | 4f4cA5 | 0.04 | 0.03 | 1.81 | 0.74 | MapAlign | -----------KVSIPQLYRYTTTLEKLLL-FIGTLVAVITGAVGMWAA----GQITVTCYLYVAEQMNN-RLRREFVKSILRQEISWFNHSGTLATKLFDNLERVKEGTGDKIGQFITGFIVAFTHSNFGDMLTTFSSVMMGSMALGLAGPQLAVLG-------TAQGAAVIDSSSIENVRTVQALAREDTFYENFCEKLDIPHKEAIK--EAFIQGLSYGCAS---- | |||||||||||||
8 | 5cwqA | 0.10 | 0.10 | 3.53 | 0.51 | MUSTER | LERESEEAERRLQEARKRSEEARERLKELAEALIEEARAVQELARVACERGNSEEAERASEKAQRVLEEARK---VSEEAR------------EQGDDEVLALALIAIALAVLALAEVACCRGNSEEAERASEKAQRVLEEARKVSEEAREQDEVLALALIAIALAVLALAEVACCRGNKEEAERAYVEEEARKVKESAEEQSEVKRLAEEAEQLAREARRHVQECRGG | |||||||||||||
9 | 2pffB | 0.12 | 0.12 | 4.14 | 0.97 | HHsearch | MAKRPFDKKSNSALFRAVGEGNAQLVAIFTDDYFEELRDLYQTYH--VLV--GDLIKFSAETLSELIRTLDAEKVFTQGL-NILEWLENNTPDKDYLLSIPISCPLIGVIQLAHYVVTKLLGFLSYLKSGLVVAIASWESFFVSVRKAITVLFFIGVRCYEPNTSLPPSILEDSLENNEPSSISNLTQEQ--VQ----DYVNKTNSHLPAGKPQSLYLTLRKAKAPSGL | |||||||||||||
10 | 2o98B | 0.08 | 0.07 | 2.77 | 0.48 | CEthreader | SLGSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEEHVNSIREYRSKIENELSKICDGILKLLDAKL---------------------IPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIATTELAP------THPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWT | |||||||||||||
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Top 10 structural analogs in PDB (as identified by
TM-align)
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Top 5 enzyme homologs in PDB
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Template proteins with similar binding site:
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References: | |
1. | Wei Zheng, Chengxin Zhang, Yang Li, Robin Pearce, Eric W. Bell, Yang Zhang. Folding non-homology proteins by coupling deep-learning contact maps with I-TASSER assembly simulations. In preparation, 2020. |