Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 560 580 600 620
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| SS Seq | CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHCCCCCCCCCHHHHCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCSSSSSSSSSSCCCCCCCCCCCCCC MDRPLSSSAEAEEELEWQVASRRRKAWAKCRSSWQASETEDLSTEATTQDEEEDEEEDLPGAQLPAAGGRGNVPNEKIAIWLKDCRTPLGASLDEQSSSTLKGVLVRNGGSFEDDLSLGAEANHLHESDAQIENCNNILAKERRLQFHQKGRSMNSTGSGKSSGTVSSVSELLELYEEDPEEILYNLGFGRDEPDIASKIPSRFFNSSSFAKGIDIKVFLSAQMQRMEVENPNYALTSRFRQIEVLTTVANAFSSLYSQVSGTPLQRIGSMSSVTSNKETDPPPPLTLKSVHISTPEKEPCAPLTIPSIRNIMTQQKDSFEMEEVQSTEGEAPHVPATYQLGLTKSKRDHLLRTASQHSDSSGFAEDSTDCLSLNHLQVQESLQAMGSSADSCDSETTVTSLGEDLATPTAQDQPYFNESEEESLVPLQKGLEKAAAVADKRKSGSQDFPQCNTIENTGTKQSTCSPGDHIIEITEVEEDLFPAETVELLREASAESDVGKSSESEFTQYTTHHILKSLASIEAKCSDMSSENTTGPPSSMDRVNTALQRAQMKVCSLSNQRMGRSLLKSKDLLKQRYLFAKAGYPLRRSQSLPTTLLSPVRVVSSVNVRLSPGKETRCSPPSFT |
1 | 1vt4I3 | 0.04 | 0.04 | 2.05 | 1.08 | CEthreader | | ---------------------------------------------EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA-ILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQRGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG |
2 | 5yfpB | 0.09 | 0.08 | 3.10 | 1.21 | SPARKS-K | | NVESLNKKVDEVIRTTTFKLMDNYQKILNYQATKKFIELNKCLTNNDFNEFIIEYSKGLTLRRRFNQSSDASQSLDLIWNSLINSNFNIDQPQETILSLFSKLLNLNTTSSSNENPILRWMSIKMNGFQNELNELSGHMISKIIHSQRLILQNNTNQDKSQGCVEL-----SYYLKINQLFQIISDTGKDSEGLKSTVEPYLNLNCQPSSQGLTDSP-----TIIEMWLLILKYDLWKICDQFIEFWEHIEKFLD--GTYQNSIINEKRKENILIGDSNIIESY-QKSLILKEEQINEVRLKGEEFITSVSQNLISF-------FTSSQSSLPSSLKDSTGDITRSNKD------SGSPLDYGFIPPNCNGLS-----CLRYLPKIVEPILKFSTELAQLNITTN-------GITICRNTLSTIINRCVGAISSTKLRDISNLENWQVYETVTFSSKSQDSSKNLTFEYGVTQFPEIVTSFQEVSIKTTRDLLFAYEKLPIINGISVVSYPIQQIISMEAVLEAILKNAAKDKDNPRNSHTILTLTNLQYFRLQYFDDAFEWNLAS--KNLELFSLLSKMESSIFGNYLSDLKINLRDTLEEKFHEINWPMYTSNSFRVGDYIIE |
3 | 6fb3A | 0.07 | 0.07 | 2.80 | 1.63 | MapAlign | | FHSEPHVLAGTVTPTIGRCNISLPMENGLNSIEWRLRKEQIKGKVTVFGRKLRVHGRNLLSIDYDRNIRTEKIYDDHRKFTLRIIYDQLGRPFLWLPSSGLAAVNVSYFFNGRLAGLQRMSERTDIDKQGRIISRMFADGKVWSYTYLEKSMVLLLQSQRQYIFEYDSSDRLHAVTMPSVARHSMSTHTSNIYNPPESNASVIFDYSDDGRILKTSFLGTGRQVFYKYGKLSKLSEIVYDSTAVTFGYDETTGVLKMVNLQSGGFSCTIRYRKIGPLVDKQIYRFSERFDYTYHDNSFRIASI-------KPIISETPLPVDLYRYDEISGKVEHFGKFGVIYQIITTAVMTLSKHFDTHGRIKEVQYEMLMPLRYDLRDRITRLGDIPYKIDDDGFLCQRGSDVFEYNSKGLLTRAYNKANGWNVQYRYDGLGRRASCKTNLGHHLQYFYADLHNPTRVTHVYNHSNSEITYMFKSNNPLSNELDLKNYVTDVKSWLVMFGFQLSNIIPGFPRAKMYFVSPPYELTESQACENGQLITGVQQTTERHNQAFMMFAVKKGRVTTGISSIATDDSRKIASVLDSDLVTLAMTSGRKVLDSGVNVTVSQPTLLINGRTRRFTNIEFQ |
4 | 2pffB | 0.18 | 0.14 | 4.44 | 1.40 | HHsearch | | STRPLTLSHGS-LEHVLLVPTAS--FFIASQLQ-EQFN------------------KILPEPTEFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLEFENCEGNDIHALAAK-LLQE-NDTTLELIKNYITAMAKRPFDKKSNSALFVGEGNAGNTDDYFEELRDLYQTYHVLVGDLIKFSAET--LSELIRTTLDAEKVFTQGLNILEWL---------ENPSYLL-SIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG----HSQGLVTAVAIAETCYEAYPNTSLPPSILEDSLENNE-------------GVPSPMLSISNLTEQVQDYVNKTNSHLPAGKQVEISVNGAKNLVVSGPPQSLYGLNLT----LRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP--------------------------------------FHSHLL----------VPAS--DLIN-----KDLVK--NNVSFNAKDIQIPVYD------TF--DGSDLRLSGSISERIVDCIIRLPVKWETT--TQ-----FKATHILGPGG-ASGLGVLTHRNK-----DGTGVRVIVAG---------TLDINPDDD |
5 | 6uekA | 0.07 | 0.07 | 2.73 | 0.77 | CEthreader | | -----------SMKKVLTSLAVGIPSPLPPPCKELDESVPHAPKRTPNLSPADRRQAIANALRYFNTADHEVLAEEFSRELDEYGHIYMYRLRPTQYEMRAYPITDYPAKSKYAAAMMMMIMNNLDNRVAMFPHELITYGGNGGV----------------FNNWAQFCLTMKYLCEMTDHQTLALYSGHPLGLFPSHPDAPRAVITNGMMVPNYSTREQYDRLYAMGCTQYGQMTAPQGIVHGTTITFRNAGRKYLGVEDLAGKVVLTSGLGGMSGAQGKAGVICGAVVVVAEVDPNALYKRKGQGWLMEVETDVEALLRRVRAASAAKEAVSIGFLGNVVTVEIVHLGSDQTSCHNPFNGGYYPVQLTFEESKKMMVEDPAMFKELVQESLRRQVAAINEMSARGLRFWDYGNSFLLEASRAGAEVWTFRYPSYVQDIMGDIFALGFGPFRWVCTSCLPEDLELTDRIATETLEKLMKDASTKSQKQISDNLLKQAGENKLVVGSQARILYADCEGRQTIAKNFNDAVRDGRLKGPVVLSRDHHDVSGTDSPFRETSDLYDGSSLTADMAVQNVIGDAFRGATWVSLHNGGGTGWGEATNGGFCLVLDGSADAERRAKLMLLW |
6 | 5l4kN | 0.06 | 0.06 | 2.50 | 0.92 | EigenThreader | | GDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPEGEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILE----SNDVPGMLAYSLKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVKEDN-------LLMAYQICFDLYESA-----SQQFLSSVIQNLRTVGTPTLKMIKILSGEMAIELHLQFLIRNNNTDL--MILKNTKDAVHTATVIANSFMHCGTTS------DQFLRDNLEWLARATNWAKFTATASLGVIHKGHEKEALQLMATYLPKDTEGGGLYALGLIHANHGGQLKNASNDIVRHGGSLGLGLAAMGTARQDVYDLLKTNLYQDDAVTGEAAGLALGLVMLEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNDDVRRAAVESLGFILFRTPEQC------PSVVNPHVRYGAAMALGICCAGTGNKEAINLLEPMTNNYVRQGALIASALIMIQQTEITCPKVNQFRQLYSKV-------INDKHDDVMAKFGAILAQGIVVGVLVFTQFWFWFPLSHFLSLAYTPTCVIGLNKDLKMPKVAYPAPLE |
7 | 6gmhM | 0.13 | 0.12 | 4.31 | 0.62 | FFAS-3D | | TDLPEAEDDELEEEADWKIKEIRKENLTRLFEKMQAYQYEQISAIRALDTTSMDELKDVYNYYGRDIPKKFGLTPEQFGENLRDSTEQFPAEPLELAKDTPEAVLEGARYMVALQIA-----------------REPLVRQVLRQTFQERAKNITPTKKGRKDVDEAHVKELLKICLAEDEGLL-TTDISIDLKGTYFEEIKQFYYRDEFSHQVQRTMAIERALQQFLYVQMAKELKNKLLAEAKEYVIKACSRKLYNWLRVAPYRRVLGIAFSSARDHPNGEGEVTDFLRLPHFTEEREKKAQDIETLKKFLLNKKPHVDVKRIVHELDQGQQLSSIGVELVDNELAILYMNSKKSEAEFRDYIQDPLIEFAQEHVVKEELLNALYCE-----FINRVNEVGVDVNR--AIAHPYSQALIQYVCGLGPRKGTHLLKILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFLKIDTEVLDGSRVHPETYEWARKEYDESAEDANPAGALEEILENPERLKDLDLDAFAEELERQGYGDKHITLYDIRAELSC------RYKDLRTAYRSPNTEEIFNMLT--------KETPETFYIGKLIICNVTGIVKTRLDNGVTGFIPTKFLS |
8 | 6zywY | 0.09 | 0.08 | 3.02 | 1.15 | SPARKS-K | | NAVYKNYDKFFVSKLIYVVAKRLTGHFNSAAGQLGDMKMHKRNLEIEEISKWVQIRGVNAALPKPSADCSKEPSVAP----LKDLKYSETFHATFETFDLRTCLFLAKGVKEERNLITLNDDEGVPQGYELNIDENQQYKDQDFLANLYLSEVMQLITKDYKNMT-------EEFIQDYIFQKVSKVYAGFQIPITLDKI--QIILKAYNSFG----------------EEVKIDFKDT------------------ISFKLTPYFFMVRINIKSQILNNTVLGSLQEGCYLLLTKEIPYFDLNCQNDYSEKIEKMK-------------KRILWEPLGKQISDELPKNRIFVQTGRKSFDIPIMQASYYMHELGLRIETQRLGWFILFFKEMKEIQITQKMNHTWLIFKVDSNITFNSISKDTIALEEQSFFKIKNYFEENQIKYEYQVDIPAKQILNNEQFFISYIESKQLMILNQMKDLKLSAYKNLYEQMQISQAITPVENHIYCSGKRKFAENLIRFGSDNNLRLHLYKFDSELTEKSYLSGLLKFASEKKIQNTDVASVPHFINIDYFSKSEKISNNIYSNFNKNPVNFTYGVEG-YSQ--FLLLDTYNNYDADVNALN |
9 | 5lg6A | 0.11 | 0.03 | 1.21 | 0.74 | CNFpred | | --------------MPWQAALSSLSYFSLMFDRS--------------------------------------EVYGPMKKYLRKQVEPLFQHFETLTNWTERPENLMDQYSEINAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNA--AQGGQDQWDFAWGQLQQAEADKLRSALACSNEVWL----LNRYLGYTLNPDLIRKQDATSTINSIASN---------VIGQPLAWDFVQSNWKKLFQD------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
10 | 6mu1A | 0.06 | 0.04 | 1.76 | 0.67 | DEthreader | | -RDVLEVVFS----N--CVSMN-SI----------------ARMCLDYLINEISGQLDVDLILCMPY----SFCRLMLHMHVDQEQVTDYDSSG------TFEVVNAIYFYNFDLLRLT-----------KEDIMVMDTKLKIIEILQFILN-RLDYRISCLLC-DE--SQS---------------V--PGALDFEHIEEQAEGIFG---LRLHFSQ--------------------EDRLRPLVQAELSVL-DV--LENEEKLCI--------------------------------ASSDRVFHESILLAIALLENTIFFRLTEDKKEKFFKFYMIMQPILRFLQLLCENHNRDLQN--FLRCQNTNLVCETLQDINQLESLTEYCQG-P-----CHEN---QNCIATHESIDITALILKSMPKELVEVIKKAYMQGVSPRNVGHNIY-------------PGGQVDGDEALEF-----PVPSICEFLTKESKRTLRSEDLFNENWQKLVLYWCARNMSFW-AL-----------------MSFVGNCVLDVEFLYHL--LYL------C---GLFVFYSLLLDLVYREETL-----LNVIKS---------------FLRK |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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