Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500
| | | | | | | | | | | | | | | | | | | | | | | | | |
| SS Seq | CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCSSSSCCCCCCCCCCCCCCCCCSSSSSSSCCCCCCCCSSSSSSSSSSSCCCCCCCCCCSSSSSSSSSSCCCCCCCCCCSSSSSSSSCCCCCCSSSSSHHHHHHHHHHCCCCCCSSSSSSSSCCCCSSSCCCCSSCCCCCCCCCCCSSSSSCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSSSSSHHHCCCCCSCCCCCSSSSSSSSCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCSSSSSSSCCCCSSSSSCCCSSSSCCSCC MPGLGRRAQWLCWWWGLLCSCCGPPPLRPPLPAAAAAAAGGQLLGDGGSPGRTEQPPPSPQSSSGFLYRRLKTQEKREMQKEILSVLGLPHRPRPLHGLQQPQPPALRQQEEQQQQQQLPRGEPPPGRLKSAPLFMLDLYNALSADNDEDGASEGERQQSWPHEAASSSQRRQPPPGAAHPLNRKSLLAPGSGSGGASPLTSAQDSAFLNDADMVMSFVNLVEYDKEFSPRQRHHKEFKFNLSQIPEGEVVTAAEFRIYKDCVMGSFKNQTFLISIYQVLQEHQHRDSDLFLLDTRVVWASEEGWLEFDITATSNLWVVTPQHNMGLQLSVVTRDGVHVHPRAAGLVGRDGPYDKQPFMVAFFKVSEVHVRTTRSASSRRRQQSRNRSTQSQDVARVSSASDYNSSELKTACRKHELYVSFQDLGWQDWIIAPKGYAANYCDGECSFPLNAHMNATNHAIVQTLVHLMNPEYVPKPCCAPTKLNAISVLYFDDNSNVILKKYRNMVVRACGCH |
1 | 5ntuA | 0.22 | 0.13 | 4.18 | 1.13 | CEthreader | | ---------------------------------------------------------------------------------------------------------------------------------------------------------QNTKSSRIEAIKIQILSKLRLETAPNISKDVIRQLLPKAPPLRELIDQYDEDDDYHATTETIITMPTE--------------KCCFFKFSSKIQYNKVVKAQLWIYL---RPVETPTTVFVQILRLIK-PMKDGTRYTGIRSLKLDMNPGIWQSIDVKTVLQNWLAAPASNLGIEIKALDENGHDL----AVTFPGPGEDGLNPFLEVKVTDTPKRSRRDFGL-------------------------DCDEHSTESRCCRYPLTVDFEAFGW-DWIIAPKRYKANYCSGECEFVF---LAAYPHTHLVHQAN---PRGSAGPCCTPTKMSPINMLYFNGKEQIIYGKIPAMVVDRCGCS |
2 | 5hlyA | 0.13 | 0.07 | 2.39 | 1.15 | EigenThreader | | ----------------------------------------------------------------------------------------------------QPEVEAVKKHILN-----LHLKKRPDVTQPVPKAALLNAIRKL--------------------------------------HVGKVGENG----------YVEIEDDENELEQTSEITFAESGTAR--------KTLHFEISKEGSDLSVVERAEVWLFLKVPKANRTRTKVTIRLFQQKH------ERELLLSEKVVDARKSTWHVFPVSSSIQRLLDQGKSSLDVRIACQCQESGASL---VLL-GEEKEQSHRPFLLQARQSG------------------------------------LECDGKVNICCKKQFVSFKD---IGWNDWIIAPSGYHANYCEGECPSHIAANLK------------------SCCVPTKLRPSLYYD------DGQNIIKKDIIVEECGCS |
3 | 3rjrA | 0.23 | 0.15 | 4.60 | 2.24 | FFAS-3D | | -----------------------------PLSTSKTIDM-----------------------------ELVKRKRIEAIRGQILSKLRLASPPSQ-----------------------------GDVPPGPLPEAVLALYNSTRDRVAGEP-----------------------------------------------------EADYYAKEVTRVLMVESGNQIYDKFKGTPHSLYMLFNTSAVPEPVLLSRAELRLLRLKLKVE-----QHVELYQK----YSQDSWRYLSNRLLAPSDSPEWLSFDVTGVVRQWLTRREAIEGFRLSAHCSCDSKDNTLHVEINLATIHGMNRPFLLLMATP--------------------------LERAQHALDTNYCFSSTEKNCCVRQLYIDFRKDLGWKWIHEPKGYHANFCLGPCPYIWSLD---TQYSKVLALYNQHNPGASAAPCCVPQALEPLPIVYYVGRKPKV-EQLSNMIVRSCKC- |
4 | 5ntuA | 0.26 | 0.15 | 4.70 | 2.67 | SPARKS-K | | --------------------------------------------------------------------QNTKSSRIEAIKIQILSKLRLETAPNISKDVIRQLLPKAPPLRELIDQYDED-------------------------DDYHATTE------------------------------------------------------------TIITMPTE--------------KCCFFKFSSKIQYNKVVKAQLWIYLR---PVETPTTVFVQILRLI-KPMKDGTRYTGIRSLKLDMNPGIWQSIDVKTVLQNWLAAPASNLGIEIKALDENGHDL----AVTFPGPGEDGLNPFLEVKVTDTPK-------------RSRRDFG------------LDCDEHSTESRCCRYPLTVDFEAFGWD-WIIAPKRYKANYCSGECEFVFYPHTH---------LVHQANPRGSAGPCCTPTKMSPINMLYFNGKEQIIYGKIPAMVVDRCGCS |
5 | 5hlyA | 0.26 | 0.15 | 4.62 | 3.67 | CNFpred | | ---------------------------------------------------------------------------VEAVKKHILNMLHLKKRPDVTQPVPK--------------------------------AALLNAIRKLHVGKVGE----------------------------------------GYVEIEDDIGRRAEMNELMEQTSEIITFAESGT----------ARKTLHFEISKEGDLSVVERAEVWLFLKVPKANRTRTKVTIRLFQQQKH----ERSELLLSEKVVDARKSTWHVFPVSSSIQRLLDQGKSSLDVRIACEQCQESGAS---LVLLGEEKEQSHRPFLMLQARQS-----------------------------------GLECDGKVNICCKKQFFVSFKDIGWNDWIIAPSGYHANYCEGECPSHIA---------------------ANLKSCCVPTKLRPMSMLYYDDGQNIIKKDIQNMIVEECGCS |
6 | 5a22A | 0.05 | 0.03 | 1.51 | 0.67 | DEthreader | | KT-VDEGAKIDRIFGHPFIDY--Y--------TGLEKLHSQVT-----------MKK------RSVL-------NT----------------------PSKKVLQTMLDTKATNWKEFI-YLKTHVMADDLTAVIKKMLDSSSGQKYEAICIANH-LQLNQMSNNEKIMTAIKITGLINDDETMQS-ADYLNYGKIPIFRGVI---------------RAFPDPDPTSLIGLA-TTVPHP---------SVHAYLGSESTSILQ-----------------SAL--------GFASQ------STAALTLMATTDTMRDLGNFDFLATLYI---------------------------AESPPLSTRRLVNYFKYQCRLIEFVGVSHAAALKS------------F-MAIISYYNIN-------------------DGIQNVGITSFCLIQISDSLAPIGNWIRSLELVRNQVLFMW--ILLKSDLHEEN-----SWRD-------------- |
7 | 5hlyA | 0.24 | 0.13 | 4.14 | 1.50 | MapAlign | | --------------------------------------------------------------------------------------------------------------EAVKKHILNLHLKKRPDVTQPVPKAALLNAIRK-----------------------------------------LHVGKVGENGYVEIEDDIGRRAENELEQTSEIITFAESG---------TARKTLHFEISEGSDLSVVERAEVWLFLKVPKANRTRTKVTIRLFQQQ----KHERSELLLSEKVVDARKSTWHVFPVSSSIQRLLDQGKSSLDVRIACEQC--QESGA-SLVLLGEEKEQSHRPFL-LQARQS-----------------------------------GLECDGKVNICCKKQFFVSFKDIGWNDWIIAPSGYHANYCEGEC------------------PSH--IAANL-KSCCVPTKLRP--SLYYDDGQNIIKKDIQ-NIVEECGCS |
8 | 5ntuA | 0.26 | 0.16 | 4.81 | 1.60 | MUSTER | | --------------------------------------------------------------------QNTKSSRIEAIKIQILSKLRLETAPNISKDVIRQLLPKAPPL-----------------------RELIDQY--------------------------------------------------------------DEDDDYHATTETIITMPTEK--------------CCFFKFSSKIQYNKVVKAQLWIYLRPVET---PTTVFVQILRLIKPMKDG-TRYTGIRSLKLDMNTGIWQSIDVKTVLQNWLAAPASNLGIEIKALDENGHDLAVTF----PGPGEDGLNPFLEVKV-------------------------TDTPKRSRRDFGLDCDEHSTESRCCRYPLTVDFEAFGW-DWIIAPKRYKANYCSGECEFVF---LAAYPHTH---LVHQANPRGSAGPCCTPTKMSPINMLYFNGKEQIIYGKIPAMVVDRCGCS |
9 | 3rjrA | 0.24 | 0.15 | 4.80 | 4.53 | HHsearch | | ----------------------------------------------------------PLSTSKTIDMELVKRKRIEAIRGQILSKLRLASPPSQGDV-----------------------------PPGPLPEAVLALYNSTRDRVAGE-------------------------------------------------------PEADYYAKEVTRVLMVESGNQIKFKGTPHSLYMLFNTSELREPVLLSRAELRLLRLKLK-----VEQHVELYQKYS-----QDSWRYLSNRLLAPSSPEWLSFDVTGVVRQWLTRREAIEGFRLSAHCSCDSKDNTLHVEINGATIHGMNRPFLLLMATPLER-----------AQ-H-ALDTN-------------YCFSSTEKNCCVRQLYIDFRDLGW-KWIHEPKGYHANFCLGPCPYIWSLD---TQYSKVLALYNQHNPGASAAPCCVPQALEPLPIVYYVGRK-PKVEQLSNMIVRSCKCS |
10 | 5hlyA | 0.23 | 0.13 | 4.14 | 1.13 | CEthreader | | --------------------------------------------------------------------------------------------------------------------------------------------------QPEVEAVKKHILNLHLKKRPDVTQPVPKAALLNAIRKLHVGKVGENGYVEIEDDIGRRAENELEQTSEIITFAES----------GTARKTLHFEISKEGSLSVVERAEVWLFLKVPKANRTRTKVTIRLFQQQK----HERSELLLSEKVVDARKSTWHVFPVSSSIQRLLDQGKSSLDVRIACEQCQES---GASLVLLGEEKEQSHRPFLLQARQSG------------------------------------LECDGKVNICCKKQFFVSFKDIGWNDWIIAPSGYHANYCEGECPSHIA---------------------ANLKSCCVPTKLRPS--LYYDDGQNIIKKDIQN-IVEECGCS |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
|