Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140
| | | | | | | |
| SS Seq | CCCCCCCSSSCCSCSSSSSSSSSSSSSSSCCCCSSSSCCCCSSSSSSSCCSSSSSSSSSSSSSSSSCCSSSSSSSSSSSSSSSSSSSSCCCCCSSSSSCCSSSSSSSSSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC LPDFTGDLRIPHVGRGRYEFHSLNIHSCELLHSALRPVPGQGLSLSISDSSIRVQGRWKVRKSFFKLQGSFDVSVKGISISVNLLLGSESSGRPTVTASSCSSDIADVEVDMSGDLGWLLNLFHNQIESKFQKVLESRICEMIQKSVSSDLQPYLQTL |
1 | 4m4dA | 0.62 | 0.62 | 17.74 | 1.50 | DEthreader | | TLPDFSGDFKIKGRGQYEFHS-LEIQNCELRGSSLKLLPGQGLSLAISDSSIGVRGKWKVRKSFLKLHGSFDLDVKGVTISVDLLLGMDPSGRPTVSASGCSSRICDLDVHISGNVGWLLNLFHNQIESKLQKVLENKVCEMIQKSVTSDLQPYLQTL |
2 | 4m4dA | 0.72 | 0.72 | 20.48 | 2.51 | SPARKS-K | | LPDFSGDFKIKAVGRGQYEFHSLEIQNCELRGSSLKLLPGQGLSLAISDSSIGVRGKWKVRKSFLKLHGSFDLDVKGVTISVDLLLGMDPSGRPTVSASGCSSRICDLDVHISGNVGWLLNLFHNQIESKLQKVLENKVCEMIQKSVTSDLQPYLQTL |
3 | 1bp1A1 | 0.46 | 0.46 | 13.29 | 1.37 | MapAlign | | IPDYSDSFKIKHLGKGHYSFYSMDIREFQLPSSQISMVPNVGLKFSISNANIKISGKWKAQKRFLKMSGNFDLSIEGMSISADLKLGSNTSGKPTITCSSCSSHINSVHVHIKSKVGWLIQLFHKKIESALRNKMNSQVCEKVTNSVSSKLQPYFQ-- |
4 | 1bp1A1 | 0.47 | 0.47 | 13.82 | 1.30 | CEthreader | | IPDYSDSFKIKHLGKGHYSFYSMDIREFQLPSSQISMVPNVGLKFSISNANIKISGKWKAQKRFLKMSGNFDLSIEGMSISADLKLGSNPSGKPTITCSSCSSHINSVHVHISKSVGWLIQLFHKKIESALRNKMNSQVCEKVTNSVSSKLQPYFQTL |
5 | 4m4dA | 0.72 | 0.72 | 20.48 | 1.99 | MUSTER | | LPDFSGDFKIKAVGRGQYEFHSLEIQNCELRGSSLKLLPGQGLSLAISDSSIGVRGKWKVRKSFLKLHGSFDLDVKGVTISVDLLLGMDPSGRPTVSASGCSSRICDLDVHISGNVGWLLNLFHNQIESKLQKVLENKVCEMIQKSVTSDLQPYLQTL |
6 | 4m4dA | 0.72 | 0.72 | 20.48 | 3.44 | HHsearch | | LPDFSGDFKIKAVGRGQYEFHSLEIQNCELRGSSLKLLPGQGLSLAISDSSIGVRGKWKVRKSFLKLHGSFDLDVKGVTISVDLLLGMDPSGRPTVSASGCSSRICDLDVHISGNVGWLLNLFHNQIESKLQKVLENKVCEMIQKSVTSDLQPYLQTL |
7 | 4m4dA1 | 0.72 | 0.72 | 20.48 | 2.02 | FFAS-3D | | LPDFSGDFKIKAVGRGQYEFHSLEIQNCELRGSSLKLLPGQGLSLAISDSSIGVRGKWKVRKSFLKLHGSFDLDVKGVTISVDLLLGMDPSGRPTVSASGCSSRICDLDVHISGNVGWLLNLFHNQIESKLQKVLENKVCEMIQKSVTSDLQPYLQTL |
8 | 2obdA1 | 0.18 | 0.18 | 5.77 | 1.30 | EigenThreader | | YPDITGEKAMMLLGQVKYGLHNIQISHLSIASSQVELVEAKSIDVSIQDVSVVFKGTLKYGYTTAWQSIDFEIDSAIDLQINTQLTADS--GRVRTDAPDCYLSFHKLLLHLQGEREGWIKQLFTNFIFTLKLVLKGQICKEINVISNIMADFVQTRA |
9 | 4m4dA | 0.72 | 0.72 | 20.48 | 2.58 | CNFpred | | LPDFSGDFKIKAVGRGQYEFHSLEIQNCELRGSSLKLLPGQGLSLAISDSSIGVRGKWKVRKSFLKLHGSFDLDVKGVTISVDLLLGMDPSGRPTVSASGCSSRICDLDVHISGNVGWLLNLFHNQIESKLQKVLENKVCEMIQKSVTSDLQPYLQTL |
10 | 4m4dA1 | 0.62 | 0.62 | 17.74 | 1.50 | DEthreader | | TLPDFSGDFKIKGRGQYEFHS-LEIQNCELRGSSLKLLPGQGLSLAISDSSIGVRGKWKVRKSFLKLHGSFDLDVKGVTISVDLLLGMDPSGRPTVSASGCSSRICDLDVHISGNVGWLLNLFHNQIESKLQKVLENKVCEMIQKSVTSDLQPYLQTL |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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