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Template proteins with similar binding site:
Click to view | Rank | CscoreLB | PDB Hit | TM-score | RMSDa | IDENa | Cov. | BS-score | Lig. Name | Download Complex | Predicted binding site residues |
| 1 | 0.46 | 1meyF | 0.750 | 2.00 | 0.514 | 0.900 | 1.03 | QNA | complex1.pdb.gz | 15,18,21,22,25,39,43,46,49,50,53 |
| 2 | 0.32 | 1meyC | 0.727 | 2.13 | 0.500 | 0.886 | 1.24 | UUU | complex2.pdb.gz | 17,20,32,44,45,49 |
| 3 | 0.24 | 1f2iG | 0.647 | 1.45 | 0.382 | 0.786 | 1.06 | QNA | complex3.pdb.gz | 15,18,21,22,25,30,42,43,46 |
| 4 | 0.23 | 1a1kA | 0.723 | 1.97 | 0.348 | 0.886 | 0.86 | QNA | complex4.pdb.gz | 21,22,39,41,42,43,46,50,53 |
| 5 | 0.20 | 1g2fF | 0.710 | 1.92 | 0.329 | 0.886 | 0.95 | QNA | complex5.pdb.gz | 11,13,15,18,22,39,41,46,49,50 |
| Click on the radio buttons to visualize predicted binding site and residues. |
(a) | CscoreLB is the confidence score of predicted binding site. CscoreLB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction. |
(b) | BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
| (c) | TM-score is a measure of global structural similarity between query and template protein. |
(d) | RMSDa the RMSD between residues that are structurally aligned by TM-align. |
(e) | IDENa is the percentage sequence identity in the structurally aligned region. |
(f) | Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein. |
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