>P13987 (128 residues) MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQV YNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFL AAAWSLHP |
Sequence |
20 40 60 80 100 120 | | | | | | MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQVYNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFLAAAWSLHP |
Prediction | CCCCCCHHHHHHHHHHHHHHCCCCSSSSSCCCCCCCCCCCCSSCCCCCCSSSSSSSCCSSSSCSSCCCCCCHHHHHHHCCCCCCSSSCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC |
Confidence | 98765207899999999863579615876279998888752125899854799964996651103331299568887448887278436877789998888775112466016889999999984279 |
H:Helix; S:Strand; C:Coil | |
Sequence |
20 40 60 80 100 120 | | | | | | MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQVYNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFLAAAWSLHP |
Prediction | 76443221001101110011344300301417646561644451545411002044545313401436505374047416476141400453102465546533443454331122233213313338 |
Values range from 0 (buried residue) to 8 (highly exposed residue) | |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | 20 40 60 80 100 120 | | | | | | | |||||||||||||
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SS Seq | CCCCCCHHHHHHHHHHHHHHCCCCSSSSSCCCCCCCCCCCCSSCCCCCCSSSSSSSCCSSSSCSSCCCCCCHHHHHHHCCCCCCSSSCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQVYNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLENGGTSLSEKTVLLLVTPFLAAAWSLHP | |||||||||||||||||||
1 | 1cdqA | 1.00 | 0.60 | 16.84 | 2.41 | SPARKS-K | -------------------------LQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQVYNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLEN-------------------------- | |||||||||||||
2 | 1cdqA | 1.00 | 0.60 | 16.84 | 1.69 | MUSTER | -------------------------LQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQVYNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLEN-------------------------- | |||||||||||||
3 | 1cdqA | 1.00 | 0.60 | 16.84 | 1.75 | HHsearch | -------------------------LQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQVYNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLEN-------------------------- | |||||||||||||
4 | 2j8bA | 0.99 | 0.60 | 16.85 | 1.44 | CNFpred | ------------------------MLQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQVYNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLEN-------------------------- | |||||||||||||
5 | 5xu1M | 0.06 | 0.05 | 2.03 | 0.83 | DEthreader | GIIIGVSSVVVIMALGDSLSRQVNDM-----------------TKSQKNISVFFSPPKPIASIVFVTLTLGPELARKMTELGLQEYQVADESVV------------E-IQQSFSFMTTIISSIAGISL | |||||||||||||
6 | 2jveA | 0.24 | 0.13 | 4.14 | 2.01 | SPARKS-K | -----------------------MALKCFTR---NGDDRTVTTCAEEQTRCLFVQLPYSEIQECKTVQQCAEVLEEVTAIGYPA--KCCCEDLCNRSEQ----------------------------- | |||||||||||||
7 | 6iomA | 0.14 | 0.11 | 3.75 | 0.74 | MapAlign | IQLQQCAQDRCNAKLNLTSAYPPNGVECYSCVGLREACPPVVSCYNVYKGCFDGNVTSLPVRGCVQD--EFCTRDGVTGPGFTLSGSCCQGSRCNSDLRNKTYF------------------------ | |||||||||||||
8 | 3bt1U2 | 0.20 | 0.12 | 4.02 | 0.66 | CEthreader | ----------------ELENLPQNGRQCYSCKGNSHGCTFLIDCRGPMNQCLVATGTHYMVRGCATASMCQHAHLGDAFSMNHIDVSCCTKSGCNHPD------------------------------ | |||||||||||||
9 | 2jveA | 0.25 | 0.14 | 4.35 | 1.39 | MUSTER | -----------------------MALKCFTR---NGDDRTVTTCAEEQTRCLFVQLPYSEIQECKTVQQCAE--VLEEVTAIGYPAKCCCEDLCNRSEQ----------------------------- | |||||||||||||
10 | 6gbiA | 0.16 | 0.12 | 3.88 | 1.74 | HHsearch | ----------------------ETGFKCFTCEKANYECNPDIYCPRETRYCYTQHTGISVTKRCVPLEECLSTGCDSEHEGHKVCTSCCEGNICNLPLPRNETDATFA------GTLEVL-------- | |||||||||||||
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Top 10 structural analogs in PDB (as identified by
TM-align)
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Top 5 enzyme homologs in PDB
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Template proteins with similar binding site:
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References: | |
1. | Wei Zheng, Chengxin Zhang, Yang Li, Robin Pearce, Eric W. Bell, Yang Zhang. Folding non-homology proteins by coupling deep-learning contact maps with I-TASSER assembly simulations. In preparation, 2020. |