Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| SS Seq | CCHHHHCCHHHHHHHHHHHHHHSCCCSSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSCCCCCCCCCCCCCCCCCCCCCSSCCCCSSSCCCCCSCCCCCCCCCCCCCCCCCCCCCCCCCCCSSSCCCCCSSSSCCCCCCCCCCCSCCCCCCCCCCCCCCCCCHHHHHHHHCSSSSSSSCC MDCRKMARFSYSVIWIMAISKVFELGLVAGLGHQEFARPSRGYLAFRDDSIWPQEEPAIRPRSSQRVPPMGIQHSKELNRTCCLNGGTCMLGSFCACPPSFYGRNCEHDVRKENCGSVPHDTWLPKKCSLCKCWHGQLRCFPQAFLPGCDGLVMDEHLVASRTPELPPSARTTTFMLVGICLSIQSYY |
1 | 4xbmB3 | 0.15 | 0.13 | 4.32 | 1.53 | SPARKS-K | | -----IRYPGCLHGTCQQPWQCNCQEGWGGLFCNQDLNYC-----THHKPCKNGATCNTGQGSYTCSCRPGYTGADECDPSPCKNGGSCTDSYSCTCPPGFYGKICELSAMTCADGPCFNGGRCSDGGYSCRCPVGYSGFNCEKKIDYCSSSPCSNGAKCVDLGDAYLCRCHCDD------------- |
2 | 4d90A | 0.25 | 0.09 | 2.64 | 1.12 | CNFpred | | --------------------------------------------------------------------------AGPCTPNPCHNGGTCEIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLNYSCECPGEFM-------------------------------------------------- |
3 | 4xbmB | 0.16 | 0.14 | 4.80 | 1.14 | MUSTER | | RYCDECIRYPGCLHGTQPWQCNCQEGWGGLFCNQDLNYCHHKPCKNGATCTTGQGSYTCSCRPGYTGATCE-LGIDECDPSPCKNGGSCTDSYSCTCPPGFYGKICELSAMTCADGPCFNGGRCSDGGYSCRCPVGYSGFNCEKKIDYCSSSPCSNGAKCVDLGDAY------------LCRCHCDD- |
4 | 4xbmB | 0.16 | 0.14 | 4.78 | 1.45 | HHsearch | | PYCTEPICLPCRVGWQGRYQQPWQCNCQEG-----WGGLCNQDLYCTHKPCKNGATCTNTQGSYTCSCRPGYTGADECDPSPCKNGGSCTDSYSCTCPPGFYGKICELSAMTCADGPCFNGGRCSDGGYSCRCPVGYSGFNCEKKIDYCSSSPCSNAKCVD-LGDAYLCRCH------------CDD- |
5 | 6pogB | 0.14 | 0.13 | 4.56 | 0.44 | CEthreader | | RNLNDRAVCSCRDGFRALREDNAYCEDIDECAEGRHYCRENTMCVNTPGSFMCICKTGYIRIDDYSCTEHDFNTVGGHNKDGCRNGGACIAANVCACPQGFTGPSCETDIDECSDGFVQCDSINLPGWYHCECRDGYHDNGMFSPSGES------CEDIDECGTSCANDTICFNLDGGYDCRCCTGHH |
6 | 5yvqA | 0.07 | 0.05 | 2.22 | 0.60 | EigenThreader | | LAKDRNGADIP-------NKPLFIQNLGLQETVNRARNYGNYGFMLTNSGDNMGTYNGLRPAVSMGRGLNVSNGMWIQMRDIVNTDSAQALDIGGLGN----KQFGIY--MINN--SRTANGT---DGQAYMNGNWLCGA-------QVIPGNYANFDSRTGGLSRDYKA----------------PS |
7 | 2j5hA | 0.79 | 0.16 | 4.66 | 0.55 | FFAS-3D | | ---------------------------------------------------------------------------------------------------------------KEHCGSILHGTWLPKKCSLCRCWHGQLHCLPQTFLPGCD-------------------------------------- |
8 | 5fmaA | 0.16 | 0.12 | 3.90 | 1.37 | SPARKS-K | | DPCASNPCANGGQCLPFESYICHCPPSFHGPTCRQDVNECGEK----PGLCRHGGTCHNEVGSYRCVCRATHTGYVPCSPSPCQNGGTCRVTHECACLPGFTGQNCEENIDDCPGNNCKNGGACVVNTYNCRCPPEW-------TGQYCTE------------------------------------- |
9 | 4d0fA | 0.19 | 0.10 | 3.27 | 1.09 | CNFpred | | -------------------------------------------------PCEHAGKCINTLGSFECQCLQGYTDVNECVSNPCQNDAACLDEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKEFQCECPTGFTGHLCQVDLHHIL-------------------------------------- |
10 | 6elhA | 0.05 | 0.04 | 1.80 | 0.83 | DEthreader | | SQKALGKYVFLTVALFVVQVLLGGLTAHYT-VEGQGFIDLGFEMWFPY------------FIGGSAGNFFALTHILNGHDLGRWQL---------FYAPGLFYGMWRWWVVH--LWVEGFFEVMGVPTL--------------VPLVLL-ANAGFGTSAVASLVLRRAADLIFIGGAICVAIQATKIV |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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