Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| SS Seq | CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC ARGPPGLRGDPGFEGERGKPGLPGEKGEAGDPGRPGDLGPVGYQGMKGEKGSRGEKGSRGPKGYKGEKGKRGIDGVDGVKGEMGYPGLPGCKGSPGFDGIQGPPGPKGDPGAFGLKVPGDPGEAGPIGPKGYRGDEGPPGSEGARGAPGPAGPPGDPGLMGERGEDGPAGNGTEGFPGFPGYPGNRGAPGINGTKGYPGLKGDEGEAGDPGDDNNDIAPRGVKGAKGYRGPEGPQGPPGHQGPPGPD |
1 | 2v04A | 0.12 | 0.12 | 4.17 | 0.70 | CEthreader | | TTGGRFVDKDNRKYYVKDDHKAIYWHKIDGKTGDIGEMVVGWQYLEIPGTGYRDNLFDNQPVNEIGLQEKWYYFGQDGALLEQTDKQVLEAKTSENTGKVYGEQYPLSAEKRTYYFDNNYAVKTGWIYEDGNWYYLNKLGNFGDDSYNPLPIGEVAKGWTQDFHVTIDIDRSKPAPWYYLDASGKMLTDWQKVNGKWYYFGSSGSMATGWKYVRGKWYYLDNKNGDMKTGWQYLGNKWYYLRSSGAM |
2 | 4hnwA1 | 0.06 | 0.06 | 2.53 | 0.48 | EigenThreader | | SLKLLDAILKKDGSHVDSLALKGLDLYSVGEKDDAASYVANAIRKIESASPICCHVLGIYMRNTKEYKESIKWFTAALNNGSTNKQIYRDLATLQSQIGDFKNALVSRKKYWEAFLGYLAVAQDVNGETLSQFEKLAEGKISDSEKYEHSECLMYKNDIMYKAASDNQDKLQNVLKHLNDIEPCVFDKFGLLERKATIYMKLGQLKDASIVYRTLIKRNPIQGDNKLKKALYGKLEQFYPRCEPPKF |
3 | 3hr2A | 0.29 | 0.29 | 8.86 | 1.21 | FFAS-3D | | -VGKEGGKGPRGETGPAGRGEVGPGPGPAGEKGSGADGPAGSGTPGPQGIAGQRGVVGLGQRGKRGFGLGPSGEGKQGPSGASGERGPGPMGPGLAGPGESGREGSGAEGSGRDKGDRGETGPAGPGAGAGAPGPVGPAGKNGDRGETGPAGPAGPIGPAGARGPAGPQGPRGDGETGEQRGIGHRGFSGLQGPGSGSGEQGPSGASGPAGPRGPGSAGSGKDGLNGLGPIGGPRGRTGDSGPAGP- |
4 | 7jjvA | 0.34 | 0.17 | 5.10 | 5.59 | SPARKS-K | | ----------------------------------------------------------MQCDGLDGADGT--SNGQAGASGLAGGPNCNGGKGGKGAPG-VGTAGGAGGVGGAG----GTGNTNGGAGGSGGNSDVAAGG-------------AGAAG--GAAGGAGTGGTGGNGGAGKPG--GAPGAGGAGTPAGSAGSPGQTTVL---------------------------------------- |
5 | 3hqvA | 0.40 | 0.40 | 11.71 | 14.85 | CNFpred | | NAGPMGPMGPVGKEGGKGPRGETGPAGRMGEVGPMGPMGPAGEKGSMGADGPAGSMGTPGPQGIAGQRGVVGLMGQRGKRGFMGLMGPSGEMGKQGPSGASGERGPMGPMGPMGLGPMGESGREGSMGAEGSMGRDGAMGAKGDRGETGPAGPMGAMGAMGAPGPVGPAGKGDRGETGPAGPAGPIGPAGARGPAGPQGPRGDMGETGEQGDRGI-MGHRGFSGLQGPMGSMGSMGEQGPSGASGPA |
6 | 5cskA | 0.05 | 0.03 | 1.47 | 0.50 | DEthreader | | GGY----SEITDAKKQRRPIPKGHCTACIFLELSDGLLASPVIEYKFSLTLEILG-E-FNGPNVR--------------------AIFSTPL---------------------------DHLDDVDLSQL--L----------------------------DLNK-LITF--MFGFYPIRNIGLMILSGYVIELFVVVVTARKRG-------------ATRAYTLLGQAQIIYNGSHLKIVWMDFNM |
7 | 2v04A | 0.11 | 0.11 | 4.05 | 1.08 | MapAlign | | GRFVDKDNRKYYVKDDHKAIYWHKIDGKTYYFGDIGEMVVGWQYLEIPGTGYRDNLFDNQPVNEIGLQEKWYYFGQDGALLEQTDKQVLEAKTSENTGKVYGEQYPLSAEKRTYYFDNNYAVKTGWIYEDGNWYYLNKLGNFGDDSYNPLPIGEVAKGWTQDFHVTIDIDRSKPAPWYYLDASGKMLTDWQKVNGKWYYFGSSGSMATGWKYVRGKWYYLDNKNGDMKTGWQYLWYYLRSSGAMV-- |
8 | 3hr2B | 0.41 | 0.41 | 12.04 | 2.46 | MUSTER | | EVGPAGPNGFAGPAGSAGEKGTKGPKGENGIVGPTGPVGAAGPSGPNGPPGPAGSRGDGGPPGMTGAAGKEGIRGPRGDQGPVGRTGEIGASGPPGFAGEKGPSGTAGPQGLLGAGIAGAPGPHGSVGPAGKHGNRGEPGPAGSVGPVGAVGPRGPSGPQGIRGDKGEPGDGARGLPGLKGHNGLQGLPGLAGLHGDQGAPGPVGPAGPRGPAG-PSGPIGKDGRSGHPGPVGPAGVRGSQGSQGPA |
9 | 3hr2B | 0.44 | 0.44 | 12.91 | 4.18 | HHsearch | | AAGPSGPIGIRGPPGERGAAGI-GGKGEKGETGLRGEIGNPGASGDRGEAGAAGPSGPAGPRGSPGERGEVGPAGPNGPKGENGIVGPTGPVGAAGPSGPNGPPGPAGSRGDGGPRPTGEIGASGPAGEKGPSGEGGNIGPTGAAGAPGPHGSVGPAGKHGNRGEPGPAGSGPRGARGLPGLKGHNGLQGLPGLAGLHGDQGAPGPVGPAGKDGRHPGPVGPAGVRGSQGSQGPAGPGPGPGPPGVG |
10 | 4kc7A | 0.07 | 0.07 | 2.86 | 0.44 | CEthreader | | NMYYVFGTHLQVAKSKDLMHWEQINTSAHDKNPIIPNINEELKETLSWARTRNDIWAPQVIQLSDGRYYMYYCASTFGSPRSAIHYAVIVKSGQVYSVDGPSEDGTPYDSRKHPNALDPYGSWFGGIYILKLDPNTGLPLPGQGYGKRLVGGNHSSMEGPYILYSPDTDYYYLFLSFGGLDYRGGYNIRVARSKNPNGPYYDPEGKSMENCMGSKTVISNYGAKLVGNFILSESNTIDFKAFGYVSP |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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