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Template proteins with similar binding site:
Click to view | Rank | CscoreLB | PDB Hit | TM-score | RMSDa | IDENa | Cov. | BS-score | Lig. Name | Download Complex | Predicted binding site residues |
| 1 | 0.06 | 1h030 | 0.820 | 1.48 | 0.339 | 0.969 | 0.63 | III | complex1.pdb.gz | 41,43,44,54,55,56,57,62 |
| 2 | 0.06 | 1elvA | 0.724 | 1.79 | 0.293 | 0.906 | 0.48 | UUU | complex2.pdb.gz | 16,18,34,44,45 |
| 3 | 0.04 | 1ridA | 0.668 | 1.90 | 0.233 | 0.938 | 0.89 | UUU | complex3.pdb.gz | 35,36,37,40,41,42,43 |
| 4 | 0.04 | 2b5i1 | 0.690 | 2.16 | 0.200 | 0.938 | 0.44 | III | complex4.pdb.gz | 33,35,41,42,44,45,46,47 |
| 5 | 0.04 | 1cklD | 0.712 | 1.76 | 0.241 | 0.906 | 0.43 | UUU | complex5.pdb.gz | 15,39,40 |
| 6 | 0.04 | 1y8eA | 0.704 | 1.80 | 0.230 | 0.953 | 0.51 | SVR | complex6.pdb.gz | 40,41,42,60,62 |
| Click on the radio buttons to visualize predicted binding site and residues. |
(a) | CscoreLB is the confidence score of predicted binding site. CscoreLB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction. |
(b) | BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
| (c) | TM-score is a measure of global structural similarity between query and template protein. |
(d) | RMSDa the RMSD between residues that are structurally aligned by TM-align. |
(e) | IDENa is the percentage sequence identity in the structurally aligned region. |
(f) | Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein. |
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