Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300
| | | | | | | | | | | | | | | |
| SS Seq | CCCCCCCCCCCCCCCCSSSSCCCCCCCCCHHHHHHHHHHHCCSSSSSSSCCSSSSSSCCHHHHHHHHHHHCCCSSCCSSSSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSSSFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRGSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSSSVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSANGEDDS |
1 | 3h2uB | 0.10 | 0.06 | 2.31 | 0.57 | CEthreader | | RLRERELSVQLQPTDALLCVANLPPS-LTQQQFEELVRPFGSLERCFLVYGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQ-----------------LTPALLHSRCLCVDRLPPGFN-DVDALCRALSAVHSPT----------FCQLACGQDGQLK----GFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRSMLAALIAAQATA-------------------------------------------------------------------------------- |
2 | 4n0tA | 0.08 | 0.06 | 2.41 | 1.15 | EigenThreader | | ----------RNRELTTVLVKNLKS--YNQNKVYKYFKHCGPIIHVDVADSFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHLTECNPLEKSKR----------TDSATLEGREIMIRNLSTELLDENLLRESFEGFG-----------SIEK-INIPAGQKEHSFNNCCAFMVFEN--KDSAERALQMNRSLLGNREISVSLAPFLERNEVKRLLA-------------------SRNSKELETLICLFPLSDKVS-------------------------PSLICQFLQEEIHINEKDDFNG |
3 | 2mxyA | 1.00 | 0.34 | 9.52 | 1.61 | FFAS-3D | | -ASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMY--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
4 | 3sdeA | 0.15 | 0.12 | 3.96 | 2.04 | SPARKS-K | | IKSFLKPGEKTYTQRCRLFVGNLPTD-ITEEDFKRLFERYGEPSEVFINRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA--------------------------THGAALTVKN--LSPVVSNELLEQAFSQFGP----------VEKAVVVVDDRGRA----TGKGFVEFAAKPPARKALERCGDGAFTPRPVIVEPM------------------------EQFDDEDGLPEKLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEAEMEAA |
5 | 4p6qA | 0.16 | 0.09 | 3.06 | 2.41 | CNFpred | | --------------TRTLFIGNLEKT-TTYHDLRNIFQRFGEIVDIDIKPQYAFLQYCDIASVCKAIKKMDGEYLGNNRLKLGFGKSMPT------------------------NCVWLDGLS--SNVSDQYLTRHFCRYG----------PVVKVVFDRL---------KGMALVLYNEIEYAQAAVKETKGRKIGGNKIKVDFANRESQLAFYHCMEKSGQDIRDFYEMLAERREER------------------------------------------------------------------- |
6 | 7c2mA | 0.09 | 0.06 | 2.40 | 0.83 | DEthreader | | -----GNKQVSETGTIGDQAA-VLLPAIGGLAIAGALGIMRLV-QPVTL-GLG--------GFLKSITYAIIVMAAILS---------YLPPDNA-RQSQEQFDKLFPGF-RTEPLTLVMKREDGEPITDAQIADMRAKALTVSG-DPDNDPKMWKERPANDSGSKDPS--VRVIQNGLENRDAKKIDELRALQPP-HGIEVFVGALEQDSIHSLFLMPIGLIIAVIWGLSTDYELVMIRITA--------------DSL--TN-LR-----------------R--NQ----------------- |
7 | 5ca5A | 0.17 | 0.11 | 3.65 | 0.87 | MapAlign | | ----------KFTGRCRLFVGNLPN-EVKETELKELFSPHGDIAECYLSGGFAFLRLDTRAHAESAKEAIDGRIIHGRQVRVRFAVH--------------------------GAAIRVKEL--SPTVSNEMLYHAFSHFG----------DVERAVHIVDEKGRPT----GEGIVEFERKPNCNEAMAAIRVFLLTPKPLICEFEYVYGMKWKELYVVEQKRRAQLDE---------------------------------------ELRESRRRLESDMELAYQDYQAQ--------------- |
8 | 3sdeA | 0.16 | 0.13 | 4.35 | 1.24 | MUSTER | | IKSFLKPGEKTYTQRCRLFVGNLPTD-ITEEDFKRLFERYGEPSEVFINRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT--------------------------HGAALTVKN--LSPVVSNELLEQAFSQFGP----------VEKAVVVVDDRGRAT----GKGFVEFAAKPPARKALERCGDGAFLLTTTPVI------VEPMEQFDDEDGLPEKLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDE---MEKQQREQVDRNIREAKEKLEAEMEAARHEHQLMLM---- |
9 | 5x8rv | 0.18 | 0.10 | 3.42 | 1.00 | HHsearch | | --SSTASSSSDGEGARRLYVGNIPRN-LNNDELRTIVEEHGAIEIAEVMRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIAT--TQAE----DSQFVESPYKVYIGN--LAKTVTNELLKDFFSEKG----------KVLGAKVQRTPTSKSN----GFGFVSFSSEEEVEAAIQALNNSVLEGQKIR----VNKA------------------------------------------------------------------------------------------------ |
10 | 3md3A | 0.16 | 0.08 | 2.73 | 0.57 | CEthreader | | ---------------RVLYVGNLDKA-ITEDILKQYFQVGGPIANIKIMVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ------------------SQQSSSDDTFNLFVGD--LNVNVDDETLRNAFKDFPS----------YLSGHVMWDMQTGSSR---GYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK-------------------------------------------------------------------------------------------------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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