Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420
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| SS Seq | CCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSSCCCCCCCCCCCCCCSSCHHHHHHCCCCCHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCC MLWKLTDNIKYEDCEDRHDGTSNGTARLPQLGTVGQSPYTSAPPLSHTPNADFQPPYFPPPYQPIYPQSQDPYSHVNDPYSLNPLHAQPQPQHPGWPGQRQSQESGLLHTHRGLPHQLSGLDPRRDYRRHEDLLHGPHALSSGLGDLSIHSLPHAIEEVPHVEDPGINIPDQTVIKKGPVSLSKSNSNAVSAIPINKDNLFGGVVNPNEVFCSVPGRLSLLSSTSKYKVTVAEVQRRLSPPECLNASLLGGVLRRAKSKNGGRSLREKLDKIGLNLPAGRRKAANVTLLTSLVEGEAVHLARDFGYVCETEFPAKAVAEFLNRQHSDPNEQVTRKNMLLATKQICKEFTDLLAQDRSPLGNSRPNPILEPGIQSCLTHFNLISHGFGSPAVCAAVTALQNYLTEALKAMDKMYLSNNPNSHTDNNAKSSDKEEKHRK |
1 | 1vt4I | 0.07 | 0.07 | 2.98 | 0.93 | CEthreader | | ALMAEDEAIFEEAHKQVQRGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG |
2 | 4um2A | 0.05 | 0.05 | 2.14 | 0.75 | EigenThreader | | LLSRDRISPEGLEKMAQLRAELLQLYERCILLDIEFSDNQNVDQILWKNAFYQVIEKFRQLVKDPNVENPEQIRNRLLELLDEGSDFFDSLLQKLQVTYKFKLEDYMDGLAIRLRKTVKYALISAQRCMICQGDIARYREQASDTANYGKARSWYLKAQHIAPKNGRPYN--------QLALLAVYTRRKLDAVYYYMRSLAASNPILTAKESLMSLFEETKRKAEQME---------KGLGSLSPSDLNKRFILSFL------HAHGKLFTRIGMETFPAVAEKVLKEFQVLLQHS-----PSPIGSTRMLQLMTINMFAVHNSQRSVIQEQAAALGLAMFSLLVRRCTCLLKESLSSPEDQDDQDD----------IK--VSSFVP--DLKELLPSVKVWSDWMLGYPDTWNPPPTSLDLPSHVAVDVWSTLADF |
3 | 6nyyA | 0.11 | 0.09 | 3.32 | 0.51 | FFAS-3D | | -VGETTAKVLKDEIDVKFKDVAGCEEAKLEIMEFVNFLKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATAGEANVPF----ITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDQIDAVGR------------KRGQSEQENTLNQLLVEMDGFNTTTNVV--------------------ILAGTNRPDILDPALLRPGQIFIGPPGRASIFKVHLRKDKLARKLASLFSGADVANAALI--AARHLSDSINQKHFEQAIERVIGG-LEKKTQVLQPEEKKTVAYHQAGHAVKGLGYAQKEQLLDRRVSEEIFFGRITTGAQDDLRKVTQSAYAQIVQF--GMNEKVGQISFDLPRQGDMVLEKPYSEATARLIDDEVRILINDAYKRTVALLTEKKADVEKV------------------------- |
4 | 4btgA | 0.11 | 0.10 | 3.75 | 0.90 | SPARKS-K | | EIWKLTAYITGSNRAIKADAVGKVPPQLRTLAPSEHELFHHIHVLSPLG---FILPDAAYVYRVGRTATYPNFYALVDASDLRRMLTALSSVDSKMLQATFKAKGALAPAL--ISQHLANAATTERSRGANAVVSSVLTILGRLWSPSTPKELDPSARLRNTNGIDLFIAYQDMVKQRGRAEVIFSDEELSLRPINESYIGQTSAIDHMGQPSHVVVYEDWQFAKEITAFTPVKLANNSNQRFLDSDRMSATLAPIGNTFAVSAFVKNRTAVYEAVSRGTVNSNGAEMTLGFPSVVERDYALDRD--------PMVAIAALRTGIVDESASNDLKRSMFNYYAAVMHYAVAHNPEVVNVRTELRIPVGYNAIIRTPEPLEAIAYNVKEFELLTVAHAIIQMWYSWFVEDDRTLAAARRTSRDDAEKLAIDGRRMQNA |
5 | 1fiyA | 0.11 | 0.04 | 1.40 | 0.64 | CNFpred | | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FAWTQNRLM---LPAWLGAGTALQKVVEDGKQSELEAMCRD--------------WPFFSTRLGMLEMVFAKA----------DLWLAEYYDQRLVDKALWPLGKELRNLQEEDIKVVLAIANDSH----LMADLPWIAESIQLRNIYTDPLN-----VLQAELLHRVEQALMVTIAGIAAGMRNTG-------------------- |
6 | 5cskA | 0.06 | 0.04 | 1.75 | 0.67 | DEthreader | | SAKDEQMEELVAFPAYGLEA-----HEHSI---FVHFLEEYYVEK---GP---------VSNNILLQCVSAIFSTPLQHIVELE--A-------------------------------DVLLQFLTAAQVYIRAYYFQREGILMSANVCTFMFGFKDGSYP----IFTDN--RNIHVY-EAVSKTSPLDKR-TSNSDLNHIFILRVSSAEI--------NNVSGYVIKT-KQPRYKAHMTTAANSCRSVIILTGAPINMLGREVYT------------------SNLQLGGTQIMYGVSHLTAKIEWMSYLTD--RPVDFTPTNETYVETRTPGQVWHPNSAFKTAQ-A-----------------------------------------NDFNNGE-LPMMILANIYIPPTGDVNARAPLQFALHDRSRMVAVISK |
7 | 1vt4I3 | 0.06 | 0.06 | 2.62 | 1.24 | MapAlign | | GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-----------------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG--GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-- |
8 | 2atyA | 0.11 | 0.09 | 3.15 | 0.62 | MUSTER | | ISCGSPPPILNGRISYSTPIAVGTVIRYS---SGTFRLIGEKSLLCITKDK-----------VDGTWDKPAPKCEYFNKYSSCPEPIVPGGYKIRGSTPYRHGDSVTFACKTNFSMNGNKSMWGPTRLPTCVSVFPLEGSIEGRGGSELADPEVPRDCGCKPCICTVPEVSSVFIFPPKPKDVLTITLTPK-VTCVVVDISKDDPEVQ-FSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLGKEFKRVNSAAFPAPIEKT-----ISKTKGRPKAPQLYTIPPQMAKDKVSL------TCMITFF-------------PEDITVE-------------------QWNGQPAENYKNTQPIMNTNESYFVYSKLNEAG-NT--TCSV----LH-------------EGLHNHHTEKSLSHSPGK------ |
9 | 2pffB | 0.18 | 0.16 | 5.05 | 0.59 | HHsearch | | -----------------------------------MDAYSTRPTLSH---GSLEHVLLVPTASISQLQEQFNLPEADDEPTVSSLVEPVGQDQVLLTEFENCEGNDIHAKTKELIKNYARIMAKRPFKKSNSALFRAV--GEGNAQLAIFG-GQGTDDYFELRDL-YQTYHVLLIKFSAETLSEL---IRTTLDAEKVGILEWLENPSDYLLSIPISCPLIGVLAHYVVTA-----KLLTPGELRSYLKGAHVTIAETESFFVSVRTVLFFIGVRC----YEAYPNTSLPSILE-DSLENGVPSPMLSISNLTQEQVQDYVNKTNSKQVEINGAKNLVVGPPQSLYGLNLTLRKAKAPSGLDQ---SRIPFSERKLKRFLPVASPFHSHLLVPASDLIN-------KDLVKNNVSFNAKDIQDSDGSISERIVRLPV |
10 | 5xmjA | 0.08 | 0.07 | 2.95 | 0.56 | CEthreader | | ------------MQIYHTDAVEASMAGLKTIMLSLVPPRRSHSSAAQGGMQAALGNAIMGDGDSPDVHFADTVKGSDWGCDQEVARIFADTAPIVMREVAHWGVPWNRVVPGKHTYYKGGKPFEAEEKAEKAGLIHARAFGGTAAWRTCYTADGTGRSVLNTLDTKCLQYGVTVHDRMQAEALIHDGGNCLGCIARCLRTGELVAYLATSTLIATGGYGRICDGGGQIIALDTGLVPMGNMEAVQFHPTGTVPTDILVTEGCRGDGGTLLDVNQYRFMPDYEPDKAQLASRDVVSRRMTEHMRKGLGVKSPYGDHLWLDIRHLGEKHITTKLREVYDICTNFLTHHYSMGGVRTNRDGAAYGLKGLFSAGESACWDMHGFNRLGGNSLAETVVAGRYIGERMVEFTKGATPSFGMQYVEDAHKKVQERITDIVTGRK |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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