>P04070 (461 residues) MWQLTSLLLFVATWGISGTPAPLDSVFSSSERAHQVLRIRKRANSFLEELRHSSLERECI EEICDFEEAKEIFQNVDDTLAFWSKHVDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSC DCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVK FPCGRPWKRMEKKRSHLKRDTEDQEDQVDPRLIDGKMTRRGDSPWQVVLLDSKKKLACGA VLIHPSWVLTAAHCMDESKKLLVRLGEYDLRRWEKWELDLDIKEVFVHPNYSKSTTDNDI ALLHLAQPATLSQTIVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVL NFIKIPVVPHNECSEVMSNMVSENMLCAGILGDRQDACEGDSGGPMVASFHGTWFLVGLV SWGEGCGLLHNYGVYTKVSRYLDWIHGHIRDKEAPQKSWAP |
Sequence |
20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 | | | | | | | | | | | | | | | | | | | | | | | MWQLTSLLLFVATWGISGTPAPLDSVFSSSERAHQVLRIRKRANSFLEELRHSSLERECIEEICDFEEAKEIFQNVDDTLAFWSKHVDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKFPCGRPWKRMEKKRSHLKRDTEDQEDQVDPRLIDGKMTRRGDSPWQVVLLDSKKKLACGAVLIHPSWVLTAAHCMDESKKLLVRLGEYDLRRWEKWELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEVMSNMVSENMLCAGILGDRQDACEGDSGGPMVASFHGTWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWIHGHIRDKEAPQKSWAP |
Prediction | CCHHHHHHHHHHHHHHHHCCCCCCCSSCCHHHHHHHHSSSCCCCCCCHHHCCCCHHHHHCCCCCCHHHHHHHHCCCHHHCCCCCSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSSSCCCCCCCSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSCCSSCCCCCCCCSSSSSSCCCSSSSSSSSCCCCSSSSCCCCCCCCCCSSSSSSSSSCCCCCCCSSSSSSSSSSSCCCCCCCCCCCCSSSSSSCCCCCCCCCSSSSSCCCCCCCCCCCCCCCCSSSSSSCCSCCCCCCCCCCCCCCSCSSSSSSSCCHHHHHHHHCCCCCCCSSSCCCCCCCCSCCCCCCCCCSSSSCCCSSSSSSSSSCCCCCCCCCCCSSSSSHHHHHHHHHHHHHHCCCCCCCCCC |
Confidence | 93378999999999997256777762469778543521211256530210478333110225687388787754843324775034688847889976774346789983768886158852899744145433023542234786433456887872351589831378754234677888764333456665555677667887778842598548999988399999579809954898149979991110889985599998866677999739999889996979999988761689984887547898434558998765333589984799982636356897787887741469985640999998770999999846415688986285788988435601998999999824877789998937765357899999998605898778999 |
H:Helix; S:Strand; C:Coil | |
Sequence |
20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 | | | | | | | | | | | | | | | | | | | | | | | MWQLTSLLLFVATWGISGTPAPLDSVFSSSERAHQVLRIRKRANSFLEELRHSSLERECIEEICDFEEAKEIFQNVDDTLAFWSKHVDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKFPCGRPWKRMEKKRSHLKRDTEDQEDQVDPRLIDGKMTRRGDSPWQVVLLDSKKKLACGAVLIHPSWVLTAAHCMDESKKLLVRLGEYDLRRWEKWELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEVMSNMVSENMLCAGILGDRQDACEGDSGGPMVASFHGTWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWIHGHIRDKEAPQKSWAP |
Prediction | 61300000000000000012223320104373034103123321010130362412430354404262023004246404200131242441544535344532042412022243212031243250420223042232322222012012444223201103214122123203221412122214424544541555254366534210001450653310000000147330000000015300000000024243010000000043455430303053013015024421414304344633040262010000034624354212442301000403033335435442231022040200337303620644024200000147234003001114100024641000000000010003562131402004226404530574644664658 |
Values range from 0 (buried residue) to 8 (highly exposed residue) | |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SS Seq | CCHHHHHHHHHHHHHHHHCCCCCCCSSCCHHHHHHHHSSSCCCCCCCHHHCCCCHHHHHCCCCCCHHHHHHHHCCCHHHCCCCCSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSSSCCCCCCCSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSCCSSCCCCCCCCSSSSSSCCCSSSSSSSSCCCCSSSSCCCCCCCCCCSSSSSSSSSCCCCCCCSSSSSSSSSSSCCCCCCCCCCCCSSSSSSCCCCCCCCCSSSSSCCCCCCCCCCCCCCCCSSSSSSCCSCCCCCCCCCCCCCCSCSSSSSSSCCHHHHHHHHCCCCCCCSSSCCCCCCCCSCCCCCCCCCSSSSCCCSSSSSSSSSCCCCCCCCCCCSSSSSHHHHHHHHHHHHHHCCCCCCCCCC MWQLTSLLLFVATWGISGTPAPLDSVFSSSERAHQVLRIRKRANSFLEELRHSSLERECIEEICDFEEAKEIFQNVDDTLAFWSKHVDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKFPCGRPWKRMEKKRSHLKRDTEDQEDQVDPRLIDGKMTRRGDSPWQVVLLDSKKKLACGAVLIHPSWVLTAAHCMDESKKLLVRLGEYDLRRWEKWELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEVMSNMVSENMLCAGILGDRQDACEGDSGGPMVASFHGTWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWIHGHIRDKEAPQKSWAP | |||||||||||||||||||
1 | 1z8gA | 0.33 | 0.20 | 6.06 | 0.83 | DEthreader | ------------------------------------------------------------------------------------------------------------------------------------------PLYPVQ-SS-MVFDKT--TWRSEMGFLAHAATSGFF--AAICQDCGRRKLP----------------------IVGGRDTSLGRWPWQVSLRYD-GAHLCGGSLLSGDWVLTAAHCFPNRVSWRVFAGAVAQ-ASPH-GLQLGVQAVVYHGGYLPSENSNDIALVHLSSPLPLTEYIQPVCLPAAGQ--A-L-VDGKICTVTGWGNTQYYG----Q-QAGVLQEARVPIISNDVCNGFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKTHSEASGMV-- | |||||||||||||
2 | 4durA | 0.24 | 0.21 | 6.57 | 0.71 | MapAlign | --AGSIEECAAKCEEDEEFTCRAFQYHSKEQQCEKKVYLSECKTGNGKNYRGTMSKTKNGITCQKWPRFPATHPSEGLERNPDCLKGTGENYRG-----NVAVTVSHTCQCRNGKRAPWCHTTSQVRWEYCKISYRGTSSTTTTGKKCQYCRNADKGPWCFTTGPWCYTTNPKLYDYCPSFDCGKPQVEPKKC---------------PGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLPRPSSYKVILGAHQEVNLEPHVQEIEVSRLFLEP------TRKDIALLKLSSPAVITDKVIPACLPSPN-YV--VA-DRTECFITGWGETFG---------AGLLKEAQLPVIENKVCNEFLNGRVQSTELCAGHLGTDSCQG--DSGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVMRNN--------- | |||||||||||||
3 | 2a7jA | 0.31 | 0.16 | 4.72 | 0.36 | CEthreader | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VVGGTEAQRNSWPSQISLQYRSWAHTCGGTLIRQNWVMTAAHCVDRELTFRVVVGEHNLNQNDGTEQYVGVQKIVVHPYWNTDDVGYDIALLRLAQSVTLNSYVQLGVLPRAGTI----LANNSPCYITGWGLTRTN-----GQLAQTLQQAYLPTVDYAICSSYWGSTVKNSMVCAGG-DGVRSGCQGDSGGPLHCLVNGQYAVHGVTSFVSGCNVTRKPTVFTRVSAYISWINNVIASN--------- | |||||||||||||
4 | 6esoA | 0.26 | 0.23 | 7.11 | 1.72 | MUSTER | IKVLSNVE-FSLKPCALSEIGCHMNIFQHLAFSDV-----------VARVLTPD-RTICTY-NCLF-----TFYTNV-----WKIESQRNVCKTSESGTPSSSTPQENTISGYSLLPEPC-HSKIYPGVDFGGEELNVTFVKGVNVCQETCTKMIRCQFFTYSLLPEDCKEEKCKCFLRLSMDGSPTRIAYGTQGSSGYSLRLCNTGDVCTIVGGTNSSWGEWPWQVSLQVKLQRHLCGGSLIGHQWVLTAAHCFDGLPLWRIYSGILNLSDITKDTPFSQIKEIIIHQNYKVSEGNHDIALIKLQAPLNYTEFQKPICLPSKGDT----STIYTNCWVTGWGFSKEKGEIQN-----ILQKVNIPLVTNEECQKRYDYKITQRMVCAG----GKDACKGDSGGPLVCKHNGMWRLVGITSWGEGCARREQPGVYTKVAEYMDWILEKTQSS--------- | |||||||||||||
5 | 4durA | 0.26 | 0.23 | 6.95 | 1.61 | HHsearch | AWDSQSPH-----------A----HGYIPSKFPNKNL----KKNYCNRELRPPNKRWECDIPRCQTPHTHNRTP------ENFPCKNLDENYC----RNPD----GKRAPWCHTNSQVRWEY---CKIPSCDPTAVVQDCYHGDGLTMNYCRNPDKGPWCFTTD-PSVRWNLKKCSFGTGTPCQDWAAQEPHRHSILPDGDQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSSSYKVILGAHQEVNLEPHVQEIEVSRLFLEPTR------KDIALLKLSSPAVITDKVIPACLPSPNYV----VADRTECFITGWGET---------FGAGLLKEAQLPVIENKVCNRYENGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVMRNN--------- | |||||||||||||
6 | 4igdA | 0.27 | 0.20 | 6.11 | 1.03 | EigenThreader | ----------------------------------------------------------------------------------GPELQPPVHGKIEPFKDQVLVSCDTGYKVLKNDTFQIECLKDGTWSNKIPTCKIVLITFSTRNNLTTYKSEI--KYSCQEPYYKMLNNNTGSLPTCLPVCGLPKF------------SRKLN----------GRPAQKGTTPWIAMLSHLNGQPFCGGSLLGSSWIVTAAHCLHQSLDFKIILGKHWRLRSDENEQHLGVKHTTLHPQYDPNTFENDVALVELLESPVLNAFVMPICLPEGPQQE------GAMVIVSGWGKQFLQ------RFPETLMEIEIPIVDHSTCQKAYAPLKTRDMICAGEKEGGKDACAGDSGGPMVTLNRGQWYLVGTVSWGDDCGKKDRYGVYSYIHHNKDWIQRVTGVRN-------- | |||||||||||||
7 | 1c5mD | 0.32 | 0.17 | 5.09 | 2.30 | FFAS-3D | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPE----RDWAESTLMTQKTGIVSGFGRTHEKGRQSTR--LKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMKTRGLPKAK--- | |||||||||||||
8 | 2b9lA | 0.24 | 0.19 | 5.80 | 1.69 | MUSTER | -----------------------------------------------------------------------------GHMAVVNIFGNASEYIPPGYEAP-LGALTALPRCGTGADQGKKVC------------IVYHRCDGVTNTVTPEEVINTTGE-----GIFDIRENANECESYLDVCCGLPPV---VPVLKPSFCGIRNERGLDFKITGTNEAEYGEFPWMVAVLKAEEQLVCGGSLIAPSVVLTGAHCVNSYQAIKIRAGEWDTLTERLPYQERKIRQVIIHSNFNPKTVVNDVALLLLDRPLVQADNIGTICLPQQSQ-----IFDSTECFASGWGKKEFGS---RHRYSNILKKIQLPTVDRDKCQADLRNTLDQTFVCAGG-EQGKDTCTGDGGSPLFCPDPSRYMQMGIVAWGIGCGDENVPGVYANVAHFRNWIDQEMQAKGLSTTPYVE | |||||||||||||
9 | 1c5mD | 0.35 | 0.18 | 5.50 | 2.77 | SPARKS-K | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQK-TGIVSGFGRT-----HEKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM---KTRGLPKAK | |||||||||||||
10 | 6esoA | 0.28 | 0.25 | 7.68 | 1.60 | HHsearch | RTGVSSVEECTNNIRCFFSYAT-NNCLLKYSPGGTPTAIKVLSNGFSLKPCALS-EIGCHM---------NIFQHLAFSDLFFTFYTNVWKIE--SQRNVC----LL-KTSESGTPTPQENTISGYSLLTCKRTL-PEPCHSKGVDFVTFVKGVNKMIRCQF-FTYSLLPEKCKCFLR-LSMDGSPTRIAYG---------TQGSSGYSLRIVGGTNSSWGEWPWQVSLQVKAQRHLCGGSLIGHQWVLTAAHCFDGQDVWRIYSGILNLSDITKDTPFSQIKEIIIHQNYKVSEGNHDIALIKLQAPLNYTEFQKPICLPSKGDT----STIYTNCWVTGWGFSKE-----KGEIQNILQKVNIPLVTNEECQKRYQDKITQRMVCA----GGKDACKGDSGGPLVCKHNGMWRLVGITSWGEGCARREQPGVYTKVAEYMDWILEKTQSS--------- | |||||||||||||
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Top 10 structural analogs in PDB (as identified by
TM-align)
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Top 5 enzyme homologs in PDB
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Template proteins with similar binding site:
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References: | |
1. | Wei Zheng, Chengxin Zhang, Yang Li, Robin Pearce, Eric W. Bell, Yang Zhang. Folding non-homology proteins by coupling deep-learning contact maps with I-TASSER assembly simulations. In preparation, 2020. |