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Template proteins with similar binding site:
Click to view | Rank | CscoreLB | PDB Hit | TM-score | RMSDa | IDENa | Cov. | BS-score | Lig. Name | Download Complex | Predicted binding site residues |
| 1 | 0.06 | 1dv3L | 0.680 | 2.46 | 0.078 | 0.827 | 0.42 | U10 | complex1.pdb.gz | 74,81,82,85,90 |
| 2 | 0.06 | 2hj6L | 0.675 | 2.47 | 0.076 | 0.827 | 0.44 | BPH | complex2.pdb.gz | 73,76,77,80,81 |
| 3 | 0.04 | 4rcrL | 0.670 | 2.53 | 0.087 | 0.827 | 0.41 | BPH | complex3.pdb.gz | 25,26,29,30,33,37,66,69,70,73 |
| 4 | 0.02 | 1pssL | 0.671 | 2.32 | 0.089 | 0.816 | 0.49 | U10 | complex4.pdb.gz | 77,78,81,85,88 |
| 5 | 0.02 | 1ds8R | 0.679 | 2.64 | 0.076 | 0.837 | 0.51 | U10 | complex5.pdb.gz | 33,37,66,70,73 |
| 6 | 0.02 | 1aigN | 0.676 | 2.66 | 0.076 | 0.837 | 0.48 | U10 | complex6.pdb.gz | 26,27,30,31,71,74,75,78,81,85 |
| 7 | 0.02 | 2jiyL | 0.677 | 2.66 | 0.076 | 0.837 | 0.45 | U10 | complex7.pdb.gz | 73,77,78,81,82,87,88,89 |
| 8 | 0.02 | 1fnpL | 0.678 | 2.49 | 0.076 | 0.827 | 0.42 | BCL | complex8.pdb.gz | 74,81,82,85,86 |
| 9 | 0.02 | 1l9jR | 0.681 | 2.77 | 0.076 | 0.847 | 0.41 | BCL | complex9.pdb.gz | 34,35,38,39,71,72,74,75 |
| Click on the radio buttons to visualize predicted binding site and residues. |
(a) | CscoreLB is the confidence score of predicted binding site. CscoreLB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction. |
(b) | BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
| (c) | TM-score is a measure of global structural similarity between query and template protein. |
(d) | RMSDa the RMSD between residues that are structurally aligned by TM-align. |
(e) | IDENa is the percentage sequence identity in the structurally aligned region. |
(f) | Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein. |
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