Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| SS Seq | CCCCHHHHHHHHHHHHHCCCCSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSCCCCCCCCCCCSSSCCHHHHHHHHCCCCCCCCCCCCCCCCCCCSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC MPDTMLPACFLGLLAFSSACYFQNCPRGGKRAMSDLELRQCLPCGPGGKGRCFGPSICCADELGCFVGTAEALRCQEENYLPSPCQSGQKACGSGGRCAAFGVCCNDESCVTEPECREGFHRRARASDRSNATQLDGPAGALLLRLVQLAGAPEPFEPAQPDAY |
1 | 3kdpA | 0.05 | 0.04 | 1.95 | 0.83 | DEthreader | | -D-TDLSRGVILVE-VKGGDRIPVDNSSEP--FSTM--A-ASLEGGQTPALAANCLVKN-L-EAV--------------DSPASKKAD-IGVAMSKAD-----MILLDDNFSIVTGVEEGRLIFDNLKKALMAIGMIQALGGFFTYFVILAENFSYGQQW---- |
2 | 1l5cA | 0.74 | 0.41 | 11.76 | 3.53 | SPARKS-K | | -------------------------------AVLDLDVRTCLPCGPGGKGRCFGPSICCGDELGCFVGTAEALRCQEENYLPSPCQSGQKPCGSGGRCAAAGICCSPDGCEEDPACDPEAAFS----------------------------------------- |
3 | 1l5cA | 0.79 | 0.40 | 11.20 | 1.03 | MapAlign | | --------------------------------------RTCLPCGPGGKGRCFGPSICCGDELGCFVGTAEALRCQEENYLPSPCQSGQKPCGSGGRCAAAGICCSPDGCEEDPACDPEA-------------------------------------------- |
4 | 1l5cA | 0.74 | 0.41 | 11.76 | 1.33 | CEthreader | | -------------------------------AVLDLDVRTCLPCGPGGKGRCFGPSICCGDELGCFVGTAEALRCQEENYLPSPCQSGQKPCGSGGRCAAAGICCSPDGCEEDPACDPEAAFS----------------------------------------- |
5 | 1l5cA | 0.74 | 0.41 | 11.76 | 1.99 | MUSTER | | -------------------------------AVLDLDVRTCLPCGPGGKGRCFGPSICCGDELGCFVGTAEALRCQEENYLPSPCQSGQKPCGSGGRCAAAGICCSPDGCEEDPACDPEAAFS----------------------------------------- |
6 | 1l5cA | 0.74 | 0.41 | 11.76 | 5.95 | HHsearch | | -------------------------------AVLDLDVRTCLPCGPGGKGRCFGPSICCGDELGCFVGTAEALRCQEENYLPSPCQSGQKPCGSGGRCAAAGICCSPDGCEEDPACDPEAAFS----------------------------------------- |
7 | 1l5cA | 0.76 | 0.41 | 11.74 | 1.36 | FFAS-3D | | -------------------------------AVLDLDVRTCLPCGPGGKGRCFGPSICCGDELGCFVGTAEALRCQEENYLPSPCQSGQKPCGSGGRCAAAGICCSPDGCEEDPACDPEA-------------------------------------------- |
8 | 2gi3A | 0.05 | 0.05 | 2.29 | 0.53 | EigenThreader | | LKLSEEEREKLPQLSLETIKRLDPHVKANILTLGRTTCKANLDEFAGSSTERSAFFPTRNPWVPGGSS--GGSAAAVSAGVVGGSVRQPASLCGVVGYKPTGPITKT--VRDAAILEIISGRDENDATTVNRKVIEEGVSERFEEALKLLERLGANKAKVRRKI |
9 | 2lbhA | 0.74 | 0.41 | 11.76 | 2.50 | CNFpred | | -------------------------------AVLDLDVRTCLPCGPGGKGRCFGPSICCGDELGCFVGTAEALRCQEENYLPSPCQSGQKPCGSGGRCAAAGICCSPDGCHEDPACDPEAAFS----------------------------------------- |
10 | 4rm6A | 0.05 | 0.04 | 1.73 | 0.83 | DEthreader | | QTIFAYNVYLLFATVLNVIVQTLNAKGRDSLVMLSFTINFTVNID------IRIAFIQ-------GALSSLLANNGK-V----NLK----GK-----KLTNQGHI------Q---SQSDIFDVFKKGTEIAEGKVGELTKIITIDIVNFTDSTKLSER------ |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
|