>P00540 (346 residues) MPSPLALRPYLRSEFSPSVDARPCSSPSELPAKLLLGATLPRAPRLPRRLAWCSIDWEQV CLLQRLGAGGFGSVYKATYRGVPVAIKQVNKCTKNRLASRRSFWAELNVARLRHDNIVRV VAASTRTPAGSNSLGTIIMEFGGNVTLHQVIYGAAGHPEGDAGEPHCRTGGQLSLGKCLK YSLDVVNGLLFLHSQSIVHLDLKPANILISEQDVCKISDFGCSEKLEDLLCFQTPSYPLG GTYTHRAPELLKGEGVTPKADIYSFAITLWQMTTKQAPYSGERQHILYAVVAYDLRPSLS AAVFEDSLPGQRLGDVIQRCWRPSAAQRPSARLLLVDLTSLKAELG |
Sequence |
20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 | | | | | | | | | | | | | | | | | MPSPLALRPYLRSEFSPSVDARPCSSPSELPAKLLLGATLPRAPRLPRRLAWCSIDWEQVCLLQRLGAGGFGSVYKATYRGVPVAIKQVNKCTKNRLASRRSFWAELNVARLRHDNIVRVVAASTRTPAGSNSLGTIIMEFGGNVTLHQVIYGAAGHPEGDAGEPHCRTGGQLSLGKCLKYSLDVVNGLLFLHSQSIVHLDLKPANILISEQDVCKISDFGCSEKLEDLLCFQTPSYPLGGTYTHRAPELLKGEGVTPKADIYSFAITLWQMTTKQAPYSGERQHILYAVVAYDLRPSLSAAVFEDSLPGQRLGDVIQRCWRPSAAQRPSARLLLVDLTSLKAELG |
Prediction | CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSCHHHSSSSSSSSSCCCCSSSSSSSCCSSSSSSSSCCCCCCCHHHHHHHHHHHHHHHCCCCCSSSSSSSSSCCCCCCCCCCSSSSSCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCSCCCCCCCCSSSCCCCCSSSCCCCCCSSCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHC |
Confidence | 9998777656665568877889888864456544568877776678864324431878807633664156728999999995789999716888858999999999999839998581899999548887888418999818999189998426887644444434456788999999999999999999996079223437711125559992999025632673456655655567777811248788819999943568999999999997899989999999999998099999999999765673999999999951595459599999999999999719 |
H:Helix; S:Strand; C:Coil | |
Sequence |
20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 | | | | | | | | | | | | | | | | | MPSPLALRPYLRSEFSPSVDARPCSSPSELPAKLLLGATLPRAPRLPRRLAWCSIDWEQVCLLQRLGAGGFGSVYKATYRGVPVAIKQVNKCTKNRLASRRSFWAELNVARLRHDNIVRVVAASTRTPAGSNSLGTIIMEFGGNVTLHQVIYGAAGHPEGDAGEPHCRTGGQLSLGKCLKYSLDVVNGLLFLHSQSIVHLDLKPANILISEQDVCKISDFGCSEKLEDLLCFQTPSYPLGGTYTHRAPELLKGEGVTPKADIYSFAITLWQMTTKQAPYSGERQHILYAVVAYDLRPSLSAAVFEDSLPGQRLGDVIQRCWRPSAAQRPSARLLLVDLTSLKAELG |
Prediction | 7524442443144624344645444344633453345443643452466165150426304024301530102002030473500002035556544421530240041040434000100000011343652100000020561102300344543444444444435644031520030011003002123645003145103000024620000010100121454444444443341103100000066651213010100000000000132007614122013003662205126503576222520140045036541751430540263155037628 |
Values range from 0 (buried residue) to 8 (highly exposed residue) | |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 | | | | | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SS Seq | CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSCHHHSSSSSSSSSCCCCSSSSSSSCCSSSSSSSSCCCCCCCHHHHHHHHHHHHHHHCCCCCSSSSSSSSSCCCCCCCCCCSSSSSCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCSCCCCCCCCSSSCCCCCSSSCCCCCCSSCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHC MPSPLALRPYLRSEFSPSVDARPCSSPSELPAKLLLGATLPRAPRLPRRLAWCSIDWEQVCLLQRLGAGGFGSVYKATYRGVPVAIKQVNKCTKNRLASRRSFWAELNVARLRHDNIVRVVAASTRTPAGSNSLGTIIMEFGGNVTLHQVIYGAAGHPEGDAGEPHCRTGGQLSLGKCLKYSLDVVNGLLFLHSQSIVHLDLKPANILISEQDVCKISDFGCSEKLEDLLCFQTPSYPLGGTYTHRAPELLKGEGVTPKADIYSFAITLWQMTTKQAPYSGERQHILYAVVAYDLRPSLSAAVFEDSLPGQRLGDVIQRCWRPSAAQRPSARLLLVDLTSLKAELG | |||||||||||||||||||
1 | 2fo0A | 0.19 | 0.17 | 5.49 | 1.17 | DEthreader | ---WNKENLLAGPE------SW-GINGSFLVRESESSPRNKPTVYGSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKYLTVAVKTLKEDT---ME-VEEFLKEAAVMKIKHPNLVQLLGVCTRE-----PPFYIITEFMTYGNLLDYLREC--------------NRQEVNAVVLLYMATQISSAMEYLEKKNFIHRNLAARNCLVGENHLVKVADFG-LSRLM-TGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYMSPYPGIDLSQVYELL-EKDYRMER--PE-G-C-PEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQESS | |||||||||||||
2 | 3g0eA | 0.21 | 0.19 | 6.07 | 1.69 | SPARKS-K | PTYKYLQKPMYEVQWKVVEEING----NNYVYIDPTQLPYDH---------KWEFPRNRLSFGKTLGAGAFGKVVEATAYGMTVAVKMLKP--SAHLTEREALMSELKVLSYNHMNIVNLLGACT-----IGGPTLVITEYCCYGDLLNFLRRKRDICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNY-VVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSGSSPYPGMPVDSKFYKMIKE------GFRMLSPHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISES- | |||||||||||||
3 | 3mdyA | 0.27 | 0.21 | 6.58 | 0.42 | MapAlign | --------------------------------DLIEQSQSSGSGSGLPLLVQRTI-AKQIQMVKQIGKGRYGEVWMGKWRGEKVAVKVFFT------TEEASWFRETEIYQTRHENILGFIAADIKG-TGSWTQLYLITDYHENGSLYDYLK-----------------STTLDAKSMLKLAYSSVSGLCHLHTPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFI--------PNTRVGTKRYMPPEVLDESLSYIMADMYSFGLILWEVARRQLPYVPPSYEDMREIVCIKLRPSFPN-RWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTLAKMSESQ- | |||||||||||||
4 | 3bkbA | 0.22 | 0.20 | 6.38 | 0.26 | CEthreader | RHFIIQSLDNLYRLEGEGFPSIPLLIDHLLSTQQPLTKKSGVVLHRAVPKDKWVLNHEDLVLGEQIGRGNFGEVFSGRLRATLVAVKSCRE--TLPPDLKAKFLQEARILKYSHPNIVRLIGVCTQKQ-----PIYIVMELVQGGDFLTFLR---------------TEGARLRVKTLLQMVGDAAAGMEYLESKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVYAAS-GGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSGASPYPNLSNQQTREFVEKGGRLPCPELC------PDAVFRLMEQCWAYEPGQRPSFSTIYQELQSIRKRH- | |||||||||||||
5 | 4y93A | 0.24 | 0.22 | 6.75 | 1.41 | MUSTER | IRYNSDLVQKYHPCFWIDGQYLCCSQTAKNAMGCQILAAAPSTAGLGY--GSWEIDPKDLTFLKELGTGQFGVVKYGKWRQYDVAIKMIKEGSMS----EDEFIEEAKVMMLSHEKLVQLYGVCTKQRP-----IFIITEYMANGCLLNYLRE---------------MRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGMTRYVLDDEY--TSSTGSKFPVKWASPEVLMYSKFSSKSDIWAFGVLMWEIYSGKMPYERFTNSETAEHIAQGLRLPRPHLA------SERVYAIMYSCWHEKADERPTFKILLSNILDVMDEE- | |||||||||||||
6 | 4y93A | 0.25 | 0.22 | 6.91 | 0.65 | HHsearch | KNPPPERYPFQVVYIRYNGQYLCCSQTAKNAMGCQILAAAP--STAGLGYGSWEIDPKDLTFLKELGTGQFGVVKYGKWRGYDVAIKMIKEGSM----SEDEFIEEAKVMNLSHEKLVQLYGVCTKQ-----RPIFIITEYMANGCLLNYLREM---------------RHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGMTRYVLDDEY--TSSTGSKFPVKWASPEVLMYSKFSSKSDIWAFGVLMWEIYSGKMPYERFTNSETAEHIAQGLRLPRPH------LASERVYAIMYSCWHEKADERPTFKILLSNILDVMDEE- | |||||||||||||
7 | 3e62A | 0.24 | 0.18 | 5.76 | 2.83 | FFAS-3D | ----------------------------------------------------TQFEERHLKFLQQLGKGNFGSVEMCRYTGEVVAVKKLQ---HSTEEHLRDFEREIEILSLQHDNIVKYKGVCYSA---GRRNLKLIMEYLPYGSLRDYLQKHK---------------ERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQ--DKEKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSGQMIVFHLIELLKNNGRLPRPDGC------PDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDNMA | |||||||||||||
8 | 2bcjA | 0.17 | 0.15 | 4.96 | 0.65 | EigenThreader | ACSHPFSKSAIEHVQGHLVKKQVPPDLFDVFQKFIESDKFTRFCQWKNVELNIHLTMNDFSVHRIIGRGGFGEVYGCRKADTAMKCLDKKRIKMKQTLALNERIMLSLVSTGDCPFIVCMSYAFHTP-----DKLSFILDLMNGGDLHYHLSQHG----------------VFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDF-----SKKKPHASVGTHGYMAPEVLQKVAYDSSADWFSLGCMLFKLLRGHSPFRTKDKHEIDRMTLTMAVEL-------PDSFSPELRSLLEGLLQRDVNRRLGAQEVKESPFFRSL--D | |||||||||||||
9 | 1k9aA | 0.29 | 0.21 | 6.35 | 2.54 | CNFpred | -----------------------------------------------------ALNMKELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKNDA-----TAQAFLAEASVMTLRHSNLVQLLGVIVEE----KGGLYIVTEYMAKGSLVDYLRSRG--------------RSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEAS------------KLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSGRVPYPRIPLKDVVPRVEKGYKMDAPDG------CPPAVYDVMKNCWHLDAATRPTFLQLREQLEHIRTHEL | |||||||||||||
10 | 3kcfC | 0.23 | 0.18 | 5.82 | 1.17 | DEthreader | -----------------------------------------YDMTTSSGLPLQRTIARTIVLQESIGKGRFGEVWRGKWRGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDN-GTWTQLWLVSDYHEHGSLFDYLNRY---------------T--VTVEGMIKLALSTASGLAHLHMEAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSTDTIDIAPNHRVGTKRYMAPEVLDSIMSFKRADIYAMGLVFWEIARYQLPYYLVPPEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQEG | |||||||||||||
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Top 10 structural analogs in PDB (as identified by
TM-align)
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Top 5 enzyme homologs in PDB
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Template proteins with similar binding site:
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References: | |
1. | Wei Zheng, Chengxin Zhang, Yang Li, Robin Pearce, Eric W. Bell, Yang Zhang. Folding non-homology proteins by coupling deep-learning contact maps with I-TASSER assembly simulations. In preparation, 2020. |