Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| SS Seq | CCCCCCCCCCCCCCCCCCCSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TNGSIPQSMMVPNRNSHNMELYNISVPGLQTNWPQSSSAPAQSSPSSGHEIPTWQPNIPVRSNSFNNPLGNRASHSANSQPSATTVTAITPAPIQQPVKSMRVLKPELQTALAPTHPSWIPQPIQTVQPSPFPEGTASNVTVMPPVAEAPNYQGPPPPYPKHLLHQNPSVPPY |
1 | 4doiA | 0.09 | 0.09 | 3.27 | 0.69 | CEthreader | | KSPASSNPLFLGGAIFTVIGVYLEGVPSLSVKWKGKTTEELTESIPFFREIVTGAFEKFIKVTMKLPLTGQQYSEKKEETFPPGSSILFALSPTGSLTVAFSKDDSIPETGIAVIENKLLAEAVLESIIGKNGVSPGTRLSVAERLSQLMMKNKDEKEVSD------------ |
2 | 2i69A | 0.08 | 0.08 | 2.95 | 0.63 | EigenThreader | | VSGAT-----WKDKPTIDVKMMNMEAANLPTMGEAHNDKRADPWGNGCGLFLKENIKYEVAIFVHGPTTVESHGNYSTQVGATQAGFSITPAAP---SYTL-KLGEY-----GRSGIDTNAYREWFMDLNLPWSSSTVWRNRETLLAGAFSSNTSGEKLQLKGTTYGVCSKAF |
3 | 1vouH | 0.14 | 0.13 | 4.34 | 0.52 | FFAS-3D | | --GKQP--IAVPSGVTVNAQDGVFKVKGPKGELTVP--------YNTELTVRQDGDQLLVERPSDAQKHRALHGLTRTLV--ANAVKGVSDG-YTINLERAKLTGKALEMNIGYSHPVIIEPPAGAVPEPTRIDVSGIDKQLVGQVAANVRKVRKPDAYHKGVRFVGEQIA-- |
4 | 4nl6A | 0.13 | 0.12 | 4.24 | 1.06 | SPARKS-K | | SLQQWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVNREEQNLSDLLSPICEVANNIEQNAQENENESQVSTDESENSRSPGNKSDNIKPKSAPWNSFLPPPPPMP------GPRLGPGKPGLKFNGPPPPPPPPPPHLLSCLPPFPSGPPIIPPPP-PICPDSLDDADALG |
5 | 3s4wB | 0.08 | 0.06 | 2.47 | 0.67 | DEthreader | | GTSNHIDDMHVIIGAVVLYYIDFQFVVDFCAAPDFPFPVKALYGESTQDGIVINLPL----------------------------SSLCLAS-HFRLLLC---------FASVFFRELDIEFICVVQLLLHDQPLEELVSSQKKKASLKQLLLHTVIYPVLRLTKHVPL---- |
6 | 2cf2C | 0.05 | 0.03 | 1.37 | 0.87 | MapAlign | | RVVKMTETGGNFDKGYVEAELDINPDLWFFGCHFIGDPVMPGGEVKFTGQVLPTAKKVTYRIHFKRIVNRRLIMG--------LADGEVLVDGRLIYTASDLKVGLFQDT--------------------------------------------------------------- |
7 | 2nbiA | 0.15 | 0.14 | 4.89 | 0.92 | MUSTER | | DECFLPYSDASRPPSCLSFGRPDCDVLPTPQNINCPRCCATECRPDNPMFTPSPDGSPPICSPT--MLPTNQPTPPEPSSAPSDCGEVIEECPLDTCLPTSDPARPPDCTAVGRPDCDVLPFPNNLGCPACCPFECSPDNPMFTPSPDGSPPNCSPTPTPPSTPTVITSPAPS |
8 | 6ef3s | 0.22 | 0.05 | 1.46 | 0.47 | HHsearch | | -----------------------------------------------------------GGKHTFNNEVSARL-----------------------GGASIAVQAPAQPPPYSHHHHHH------------------------------------------------------ |
9 | 5lonB | 0.07 | 0.06 | 2.60 | 0.54 | CEthreader | | LNFNVIARYDPKIKQLLFHTPHATVYKWGDDNW------------------NKLEYQGVLAIYLRDVGDKEAILPLTGHDIYNYGLIIMNRINPDNFSLAIAPNSVLNKRKLFAPNREEELEPMKVEVRDDLVMIKTLKKEVYGIWVHTPEDRQNIYELIKYLLENEPTDS-- |
10 | 4qiwA3 | 0.03 | 0.02 | 1.41 | 0.57 | EigenThreader | | PLPGKTLEETLESKIMAVLAEARDNAGKVAERYLGMNNHAVIMAKTGARGKITQMAAMLGQQSRLYRGYRGRVLFKPGDLGARARGFVTNSYKSGLTPQEYFF------HAMGGREG-------------LVDTAVRTAQSGYMQRRLINALQDL------------------ |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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