Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480
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| SS Seq | CCCCCCSSSSSSSCCCCCCCCCCCCCCCCCCCCCCSSSSCCCCCSSSSSCCCCSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSSSSSCCCSSCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCSSSSSSCCCSSSSSCCCCCCSSSSSSSSSSSSSSSSCCCCCCCCSSSSSSCCCCCSSSSSSSSSCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSSSSSSSSSSSCCCCCCHHHHHHHHHHHHHCCCCCCCCCSSSSSSSSSSSSSSCSCCCCCCCSSSSSSSSSSSSSSSCCCCCCSSSSSSSCCCCCSSSSSSSCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCC MLGKDYMLAIILVNCDDDLWGDHSLEVEAGLPPGWRKIHDAAGTYYWHVPSGSTQWQRPTWELGDAEDPGTGTEGIWGLRPPKGRSFSSLESSLDRSNSLSWYGGESYIQSMEPGAKCFAVRSLGWVEVPEEDLAPGKSSIAVNNCIQQLAQTRSRSQPPDGAWGEGQNMLMILKKDAMSLVNPLDHSLIHCQPLVHIRVWGVGSSKGRDRDFAFVASDKDSCMLKCHVFCCDVPAKAIASALHGLCAQILSERVEVSGDASCCSPDPISPEDLPRQVELLDAVSQAAQKYEALYMGTLPVTKAMGMDVLNEAIGTLTARGDRNAWVPTMLSVSDSLMTAHPIQAEASTEEEPLWQCPVRLVTFIGVGRDPHTFGLIADLGRQSFQCAAFWCQPHAGGLSEAVQAACMVQYQKCLVASAARGKAWGAQARARLRLKRTSSMDSPGGPLPLPLLKGGVGGAGATPRKRGVFSFLDAFRLKPSLLHMP |
1 | 2pffB | 0.07 | 0.07 | 2.91 | 1.08 | MapAlign | | GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG--GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG---------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-GGGGGGGGGGGGGGTQPALTLMEKAAFETFAGHSLGEYAALASLDVMSIESLVEVVFYRGMTMQVRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVT------- |
2 | 3d8dA | 0.56 | 0.16 | 4.50 | 1.37 | FFAS-3D | | -------------------------------------------------------------------------------------------------------------------IKCFAVRSLGWVEMTEEELAPGRSSVAVNNCIRQLSYHKNNLHDPSGGWGEGKDLLLQLEDETLKLVEPQSQALLHAQPIISIRVWGVGRDSER--DFAYVARDKLTQMLKCHVFRCEAPAKNIATSLHEICSKIMAE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
3 | 3d8dA | 0.55 | 0.16 | 4.51 | 1.60 | CNFpred | | ------------------------------------------------------------------------------------------------------------------GIKCFAVRSLGWVEMTEEELAPGRSSVAVNNCIRQLSYHKNNLHDMSGGWGEGKDLLLQLEDETLKLVEPQSQALLHAQPIISIRVWGVGRDS--ERDFAYVARDKLTQMLKCHVFRCEAPAKNIATSLHEICSKIMAEL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
4 | 2yszA | 0.32 | 0.12 | 3.71 | 2.91 | HHsearch | | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSSGSSGPTPKTELVQKFRVQYLGMLPVDRPVGMDTLNSAIENLMTSSSKEDWPSVNMNVADATVTVISEK----NEEEVLVECRVRFLSFMGVGKDVHTFAFIMDTGNQRFECHVFWCEPNAANVSEAVQAACSGPSSGIEGRGSSGS-----------SGSSGSSGDAAVTPEERHL--SKMQQNGYE---NPTYKFFEQMQN-------- |
5 | 3suzA | 0.11 | 0.06 | 2.22 | 0.62 | CEthreader | | ------------------------------------------------------------------------------------------------------------GSEDLIDGIIFAANYLGSTQLLSERNPSMMQAQEAVSRVKRMQKAAKIKKKANGDAQTLTEVDLFISTQRIKVLNADTQETMMDHALRTISYIADIGN-----IVVLMARRKKQYKMICHVFESE-DAQLIAQSIGQAFSVAYQEFLRANGINPEDLSQKEYSDIINTQEMYNDDLIHFSNS---ENCKELQLEKHKGEIL----------------GVVVVESSILPTVILANMMNGGGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTETPLYI------------------------------------------------------------------------------------ |
6 | 2b39A | 0.07 | 0.06 | 2.59 | 0.67 | EigenThreader | | VGKSIYVSATVILQSGSGIPIVTSPYQIHFTKTPKFFK----PAMPFDLMVYVTNPDGSGSNVQSLTQDDGVAKLKKDNIPEGRQATPYNTQGNSNNPRVELKPGEDPGEQAKIRYYTYMIMNKGGRQYRE-------------------------PGQDLTSDFIPSFRLVAYYTLDSVWVDVKDSC-----MGTLVVKNGGKEEKHHRPGQLKIEADQGARVGLVAVD---KGVFVACVKAFLDCCEYITQLRQQHSRDGALDDDIIPEEDIISRSQFPESTVMQDFFIDLRLPYSVVRNE-----------------------QVAILYNYREAVRVELLYNLATAKKRHQQTITIPVEVKAAVYNHISDGVKKTLK----VVPKILLQGTPVAQMTEDAIPTVIAVHYLDSTDQWEKRQESLELIRKGYTQQLAFRQKSSAYAAFQYFALAANLIAIDSKDLCETVKWLILEKQKPDGIFQE |
7 | 3dxdA | 0.44 | 0.12 | 3.49 | 1.27 | FFAS-3D | | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NELVQKFQVYYLGNVPVAKPVGVDVINGALESVLSSSSREQWTPSHVSVAPATLTILHQQ-----TEAVLGECRVRFLSFLAVGRDVHTFAFIMAAGPASFCCHMFWCEPNAASLSEAVQAACMLRYQKCLDARSQ------------------------------------------------------------------ |
8 | 3d8dA | 0.56 | 0.16 | 4.56 | 0.86 | SPARKS-K | | ------------------------------------------------------------------------------------------------------------------GIKCFAVRSLGWVEMTEEELAPGRSSVAVNNCIRQLSYHKNNLHDPSGGWGEGKDLLLQLEDETLKLVEPQSQALLHAQPIISIRVWGVGRDSER--DFAYVARDKLTQMLKCHVFRCEAPAKNIATSLHEICSKIMAEL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
9 | 2yszA | 0.41 | 0.11 | 3.21 | 1.53 | CNFpred | | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KTELVQKFRVQYLGMLPVDRPVGMDTLNSAIENLMTSSSKEDWPSVNMNVADATVTVISEK----NEEEVLVECRVRFLSFMGVGKDVHTFAFIMDTGNQRFECHVFWCEPNAANVSEAVQAACSGPSSGIEG---------------------------------------------------------------------- |
10 | 6xjbA | 0.07 | 0.05 | 1.96 | 0.67 | DEthreader | | LKITAKALQQNFLPFYNTIYLLSAVMMKDDQVANKLL-------LHYNDHS-SEKFDLKYQDALDRDVKVLPLQLAIRKTLGISPE----V--KL--TELYLEDQFS--K------LGTYLE-W-----------LV-HPDFFGKGNTS-LDT------E--L-KSGFNNLLA------KNN-------VD-------YGISLASQHG---LFTLEFTTKSIGVYDRIT----------VLPLLTLPERSVFVGAYDRYRHLDFVEENARETAKTILLYAYATGHGPEF--------DATSRLQVMFDLIYMMEYEGSILQKMAALRKIEN--------NVVKE---------------------SLIDHNILSAEY------IKLFAPIYSALSSEKGTPGDMGRRIAYLLAKGFKDG----------------QYEEDAKQQGQTINLYGK--------ERGLVTDELVLKKVFDGK------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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