Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 560
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| SS Seq | CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCSSSSSCCCCCCCCCCSCCCCCCCCCCCCCCSSCCCSSSSCCCSSSSCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCSSSCCHHHHCCCCCCCSSSSSSSSSSCCCCCSSSSSSCSSSSCCCCCCCCCCCCCCCSSSSSSSSCCCCCCCCCSSSSSSSSSSCCCCCSSSSSSSSSSSCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCSCCHHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCSSSCCCCCCCCCCCCCCCCCCC SLTTNHQYVSSGYPSLQNSFIKSGPSVPPLVNPPLPTTFQPGAPHGPPPAGGPPPVRALTPLTSSYRDVPQPLFNSAVNQEGITSNTNNGSMVVHSSYDEIEGGGLLATPQLTNKNPKMSRSVGYSYPSLPPGYQNTTPPGATGVPPSSLNYPSGPQAFTQTPLGANHLTTSMSGLSLQPEGLRVVNLLQERNMLPSTPLKPPVPNLHEDIQKLNCNPELFRCTLTSIPQTQALLNKAKLPLGLLLHPFKDLVQLPVVTSSTIVRCRSCRTYINPFVSFLDQRRWKCNLCYRVNDVPEEFLYNPLTRVYGEPHRRPEVQNATIEFMAPSEYMLRPPQPKIGFEAVMRIRCTKGLSIHTFHGNFFVRSTDLLSLPNVNPDAGYAVQMSVEESLTDTQLVSFQSALLYTSSKGERRIRVHTLCLPVVSTLNDVFLGADVQAISGLLANMAVDRSMTASLSDARDALVNAVIDSLSAYRSSVLSNQQPGLMVPFSLRLFPLFVLALLKQKSFQTGTNARLDERIFAMCQVKNQPLVYLMLTTHPEDRTESALSYYEFLLHIQQQVNK |
1 | 3efoB | 0.26 | 0.17 | 5.18 | 1.00 | DEthreader | | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SR---QIPPLVTTDCM--------I-Q----DQ-G-NASPRFIRCTTYCFPCTSDMAKQAQIPLAAVIKPFATIPLYLVNHGEGPVRCNRCKAYMCPFMQFIGGRRYQCGFCNCVNDVPPFYFQH----RRLDHYEKPELSLGSYEYVATLDYCRKPCPGKIGFDAIMRVRTSTGFRATDFFGGILMNNTTDVEMAAIDCDKAVTVEFKHDDKLSEDSGALIQCAVLYTTISGQRRLRIHNLGLNCSSQLADLYKSCETDALINFFAKSAFKAVLHQPLKVIREILVNQTAHMLACYRKNCASPSAAQLILPDSMKVLPVYMNCLLKNCVLLSRPEISTDERAYQRQLVMTMGVADSQLFFYPQLLLPAA-NGIIQQKRPYS---- |
2 | 3eh2A | 0.15 | 0.13 | 4.46 | 1.45 | EigenThreader | | GVRGQVPPLVTTNFQGNASPRYSYTSDMAKQAQVPPLARLPPEEASPHGESGPLRCNRCKAYMCPFMGGRCFCSCINDVPPQYFQHLDHTGKRVDAYDRPELSLGATVDYCKNNKFPSPPLPREGGAEESAIKSSLAQPDVADMFVPLLDGFLVNVNESRAVITSLLDQIPEMFADTRETETVF-----------------------------VPVIQAGMEALKAA------------ECAGKLFLSLPIAEAPGKLKNRDDRKLINTCCVDL----FLFPNQYVQLTGGSVASFQVENDQERFLSDLRRDVQK-----------------------VVGFDAVMRVRTSTGIRAVDFFGAFYMSNTTDVELAGLDGDKTVTVEFKHDDRLNEESGALLQCALLYTSCAGQRRLRIHNLALNCCTQLADLYRNCETDTLINYMAKFAYRGVLNSPVKAVRDTLITQCAQILACYRKNCGQLILPECMKL-----LPVYLNCVLKSDVLQPGAEVTTDDRAYVRQLVTSMDVTETNVFFYPFLWVGASVQQGVVQSLFS---VS |
3 | 1pcxA3 | 0.34 | 0.21 | 6.15 | 3.26 | SPARKS-K | | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RPMNQLYPIDLLELPPPITDLTLPPPPLVIPVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYPPPLNEDGLIVRCRRCRSYMNPFVTFIEGRRWRCNFCRLANDVPMQMDQ------PKSRYDRNEIKCAVMEYMAPKEYTF-------CMETVMRARGSTGLRMSRFYGHFFNRSSDLCAFSTMPRDQSYLFEVNVDESI-MADYCYVQVAVLLSLNNSQRRIRIITLAMPTTESLAEVYASADQLAIASFYNSKAVEKALNSSLDDARVLINKSVQDILATYKKEIVAGGAP-LRLCANLRMFPLLMHSLTKHMAFRSG-IVPSDHRASALNNLESL---------------------------------- |
4 | 3efoB | 0.25 | 0.17 | 5.38 | 2.21 | MapAlign | | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------GSPIQVIENDRASRGGQVYATNTRGQ--------IPPLVTTDCMIQDQGNASPRFIRCTTYCFPCTSDMAKQAQIPLAAVIKPFATISPLYLVNHSGPVRCNRCKAYMCPFMQFIGGRRYQCGFCNCVNDVPPFYQHLDHIGRRLDHYEKPELSLGSYEYVATLDYCRNDIEKKIGFDAIMRVRTSTGFRATDFFGGILMNNTTDVEMAAIDCDKAVTVEFKHDDKLSEDSGALIQCAVLYTTISGQRRLRIHNLGLNCSSQLADLYKSCETDALINFFAKSAFKAVLHQPLKVIREILVNQTAHMLACYRKNCASPSASQLILPDSMKVLPVYMNCLLKNCVLLSRPEISTDERAYQRQLVMTMGVADSQLFFYVEDKGGSSYVDFLCCVHKEICQ-- |
5 | 1pcxA3 | 0.35 | 0.21 | 6.29 | 1.21 | CEthreader | | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RPMNQLYPIDLLTELPTLPPPPLVIPPERMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYPPPLNEDGLIVRCRRCRSYMNPFVTFIEQRRWRCNFCRLANDVPMQMDQ------PKSRYDRNEIKCAVMEYMAPKEYT-------FCMETVMRARGSTGLRMSRFYGHFFNRSSDLCAFSTMPRDQSYLFEVNVDESIMA-DYCYVQVAVLLSLNNSQRRIRIITLAMPTTESLAEVYASADQLAIASFYNSKAVEKALNSSLDDARVLINKSVQDILATYKKEIVA-GGAPLRLCANLRMFPLLMHSLTKHMAFRSG-IVPSDHRASALNNLESL---------------------------------- |
6 | 1pcxA3 | 0.34 | 0.20 | 6.05 | 2.11 | MUSTER | | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RPMNQLYPIDLLELPPPITDLTLPPPPLVIPVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYPPPLNEDGLIVRCRRCRSYMNPFVTFIEGRRWRCNFCRLANDVPMQMDQ------PKSRYDRNEIKCAVMEYMAPKEYT-------FCMETVMRARGSTGLRMSRFYGHFFNRSSDLCAFSTMPRDQSYLFEVNVDESI-MADYCYVQVAVLLSLNNSQRRIRIITLAMPTTESLAEVYASADQLAIASFYNSKAVEKALNSSLDDARVLINKSVQDILATYKKEIVA-GGAPLRLCANLRMFPLLMHSLTKHMAFRS-GIVPSDHRASALNNLESL---------------------------------- |
7 | 1pcxA | 0.33 | 0.22 | 6.60 | 4.31 | HHsearch | | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RPMNQLYPIDLLTEPPPITDLTLPPPPLVIPVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYPPPLNEDGLIVRCRRCRSYMNPFVTFIEGRRWRCNFCRLANDVPMQMDQ------PKSRYDRNEIKCAVMEYMAPKEYTLRQPPPDFCMETVMRARGSTGLRMSRFYGHFFNRSSDLCAFSTMPRDQSYLFEVNVDESIMA-DYCYVQVAVLLSLNNSQRRIRIITLAMPTTESLAEVYASADQLAIASFYNSKAVEKALNSSLDDARVLINKSVQDILATYKKEIVAG-G-APLLCANLRMFPLLMHSLTKHMAFRS-GIVPSDHRASALNNLESLPLKYLIKNIYPDVYSLHDMADEAGLNATSSLFER |
8 | 3eh1A | 0.77 | 0.51 | 14.30 | 2.57 | FFAS-3D | | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QPESLRPVNLTQERNILPMTPVWAPVPNLNADLKKLNCSPDSFRCTLTNIPQTQALLNKAKLPLGLLLHPFRDLTQLPVITSNTIVRCRSCRTYINPFVSFIDQRRWKCNLCYRVNDVPEEF---------MEPHKRPEVQNSTVEFIASSDYMLRPPQPAVYLFVLMRIRCTKGLSMHTFHGNFFVRSTDLLSLANINPDAGFAVQLSIEESLTDTSLVCFQTALLYTSSKGERRIRVHTLCLPVVSSLADVYAGVDVQAAICLLANMAVDRSVSSSLSDARDALVNAVVDSLSAYGS-----TVSALMAPSSLKLFPLYVLALLKQKAFRTGTSTRLDDRVYAMCQIKSQPLVHLMKMIHPNLYREAAFSYYEFLLHVQQQICK |
9 | 3eg9A2 | 0.17 | 0.10 | 3.38 | 1.70 | EigenThreader | | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVLCRTTCRAVLNPLCQVDYAKLWACNFCYQPSYAGI----SELNQPAELLPQF----SSIEYV--------VLRGPQMGFGGTLEIKTSRE-IKISGAIGPCGTGGTCQWKICGLPTTTLAIYFEVVNQIPQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWQTQIQNIAASFDQEAAAILMARLAIYRAETEEGPDVLRWLDRQLIRLCQKFG-EYHKDDPSSFRFSETFSLYPQFMFHLRRSSFL-QVFNNSPDESSYYRHHFMRQDLTQSLIMIQPPILTDDVSLQVFMDHLKKLAVS- |
10 | 3egdB | 0.95 | 0.62 | 17.41 | 2.63 | CNFpred | | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EGLRVVNLLQERNMLPSTPLKPPVPNLHEDIQKLNCNPELFRCTLTSIPQTQALLNKAKLPLGLLLHPFKDLVQLPVVTSSTIVRCRSCRTYINPFVSFLDQRRWKCNLCYRVNDVPEEFL---------EPHRRPEVQNATIEFMAPSEYMLRPPQPKIGFEAVMRIRCTKGLSIHTFHGNFFVRSTDLLSLPNVNPDAGYAVQMSVEESLTDTQLVSFQSALLYTSSKGERRIRVHTLCLPVVSTLNDVFLGADVQAISGLLANMAVDRSMTASLSDARDALVNAVIDSLSAYRSSV-----PGLMVPFSLRLFPLFVLALLKQKSFQTGTNARLDERIFAMCQVKNQPLVYLMLTTHPSLYRVDNLSDEGALNISDRTIPQ |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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