Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| SS Seq | CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC MSQPGIPASGGAPASLQAQNGAALASGSPYTNGPVQNALLSSQESVSQGYNFQLPGSYPHPIPAKTLNPVSGQSNYGGSQGSGQTLNRPPVASNPVTPSLHSGPAPRMPLPASQNPATTPMPSSSFLPEANLPPPLNWQYNYPSTASQTNHCPRASSQPTVSGNT |
1 | 3n6rA2 | 0.06 | 0.06 | 2.60 | 0.54 | CEthreader | | RRVGTEWVVTLQGADFPVTIAADHDGSTVSFDDGSSMRVTSDWTPGDQLANLMVDGAPLVLKVGK------ISGGFRIRTRGADLKVHVRTPRQAELARLMPEKLPPDTSKMLLCPMPGLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASA |
2 | 4i43B1 | 0.05 | 0.05 | 2.29 | 0.53 | EigenThreader | | LNRLLRLIVDPNIADYITAKNNVKYGLIRGLKFERATDLAGPANNPNEFMQFKSKEVEKAHPPDPNFENSIGYNNRKCWP---KDSRMRLIRQDVNLGRAVFWEIQSRVPTSLTSIKWENKRQEAIQQNRRLAFEELEGSWDRGIPRISTLFQRDRHTLAYDRGH |
3 | 3j2k7 | 0.12 | 0.12 | 4.04 | 0.46 | FFAS-3D | | -----MPCSG-----LTGANLKEQSDFCPWYIGLPFIPYLDNLPNFNRSVDGPIRLPIVDKYKDMGTVVL-GKLESGSIF-KGQQLVMMPNKHNVEVLGILSDDTETDFVAPGENIEEEEILPGFILCDPSNLCHSGRTFDVQIVIIEHKSIICPGYNAVLHIHT |
4 | 3jc8Ta | 0.10 | 0.10 | 3.57 | 1.18 | SPARKS-K | | ---APRGRESAPGEVHSVESGDTLWDSQRYLGSPWYWPKVWSYNPEIANPHWIYPG---NQVRFFAAKQVDGTVITALVPYLTVLGENHSIVVDKGSADVELGNTFNILRKGD--PSRHVLGHDVRKPSKEEQSFPWRSIGAEVKERTSNCLMTRSLEELVPGDR |
5 | 1tubA | 0.03 | 0.02 | 1.46 | 0.83 | DEthreader | | SIHVFVDLGKEIGIIVLDRILADQCTGLQGFSVFHSFTGSGFTS---L--MERSVDYGKSKL-EFSIYPAP----------------------VSTVVYNSTTTTSDCA-VITASLRFFLATMVCPYMACGFKVGIRA-VCML--SNTTAIAAWLKFYFVYVEGM |
6 | 5h3kA | 0.14 | 0.13 | 4.57 | 0.71 | MapAlign | | FIQQGNQISIDGKSYPVAWGQWQEGGQTRTGLGFLGLDLLDNTSPNQQPVQWFSGDRQTLNTLVMPNTNAQILTVRDGRQSWGERVVLELSQPAFWQVSQAREEAVVTINASSQIRYRLERSGASSKVHFQLPVGYKLQVSTLTSPFRLVIDARADAPPV----- |
7 | 2nbiA | 0.16 | 0.16 | 5.25 | 0.87 | MUSTER | | ASRPPSCLSFGRPDVLPTPQNINCPRCCATECRPDNPMFTPSPDGSPPICSPTMLPTNQPTPPEPSSAPSDCGEVIEECPLPTSDPARPPDCTAVGRPDCDVLPFPNNLGCPACCPFECSPDNPMFTPSPDGSPPPTMLPTPQPSTPTVITSPAPSSQPSQCAEV |
8 | 5fdv1y | 0.31 | 0.03 | 0.92 | 0.36 | HHsearch | | ------------------------------------------------------------------------------------------------------------------------VDKGSYLPRPTPPRPI----------------------------- |
9 | 6xlrA | 0.11 | 0.10 | 3.75 | 0.51 | CEthreader | | TGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSW-IPGPDMQVARGQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWL----FGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKR |
10 | 5t2xA2 | 0.04 | 0.04 | 2.12 | 0.52 | EigenThreader | | FYGQAAECRKPFGDNELEFLKKSAYQHCFYAYNSLSTWAYEKYKGLNDYSLLTLHYAQKACQYHWTPGYLLFYKTCLNLAILSSYQEALEALLIARKLSEHQYSISAINNAYFGKGLIHGNESWDKAISETIAKGK----IPSTLLNKIYDKASEKAKGILDEFT |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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