Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| SS Seq | CCCCCSSSSSSCCCCCCCHHHHHHHHHHHCCCCSSSSSSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHSCCCCCSSSSSCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC ENLVRRTLFITGLPRDARKETVESHFRDAYPTCEVVDVQLCYNVAKLIYLCKEKKKTEKSLTYYTNLQVKTGQRTLINPKPCGQFCCCEVLGCEWEDAISYYTRMKDRLLERITEEERHVQDQPLGMAFVTFQEKSMATYILKDFNACKCQSLQCKGEPQPSSHSRELYTSKWTVTFAAKTEEPASDKGSEAEAHMPPPFTPYVPRILNGLASERTALSPQQQQQQTYGAIHNISGTIPGQCLAQSATGSVAAAPQEA |
1 | 6oceA | 0.18 | 0.11 | 3.55 | 0.83 | DEthreader | | ERRPDFTVLVRNIPDESISELVEHFFLVN-HPDHYLRHQVVYALADLVEKKKKLQNWLDYYQLKYERNPSKRPTTKTGFLG--------C-FGSEVDAIEYYKAEIEIGKEEADERQKIMKQSAVPAAFVSFRSRWGAAVCAQT-QQT--SNP-----------------TVWITEWAPEP-RDVYWNL--------------------------------------------------------------A------ |
2 | 5yd1A | 0.19 | 0.16 | 5.02 | 1.41 | SPARKS-K | | RRPDQFTVLVRNVPPDPDEELVEHFFLVNHPD-NYLTHQVVCNANKLADLVSKKTKLQNWLDYYQLKYTRNNSQI--RPA------------------IEHYIAEVDKTSKEIAEERENVVKSVMPASFVSFKTRWAAAVCAQT--------------------TQTRNPTEWLTEWAAEPRDIYWPNLAIPYVS---LTVRRLVMNVAFFFLTFFFIIPIAFVQSLATIKSLIQGLLAGIALKLFLIFLPAILMTMS |
3 | 5yd1A | 0.18 | 0.15 | 4.81 | 1.00 | MapAlign | | RRPDQFTVLVRNVPPTV-SELVEHFFLVNHPDN-YLTHQVVCNANKLADLVSKKTKLQNWLDYYQLKYTRNNSQI--------------------RPAIEHYIAEVDKTSKEIAEERENVQKSVMPASFVSFKTRWAAAVCAQTT-------------------Q-TRNPTEWLTEWAAEPRDIYWPNLAIPYVSLTVRRLVMNVAFFFLTIAFVQSLASLIQGLLAGIALKLFLIFLPAILMTMSKFEGFTSVSFLE |
4 | 5yd1A | 0.17 | 0.14 | 4.71 | 0.74 | CEthreader | | RRPDQFTVLVRNVPPDPDSELVEHFFLVNHPDN-YLTHQVVCNANKLADLVSKKTKLQNWLDYYQLKYTRNNSQ--------------------IRPAIEHYIAEVDKTSKEIAEERENVVNDQKPASFVSFKTRWAAAVCAQTT--------------------QTRNPTEWLTEWAAEPRDIYWPNLAIPYVSLTVRRLVMNVAFFFLTFFFIIPIAFVQSLATIKSALKLFLIFLPAILMTMSKFEGFTSVSFLE |
5 | 5yd1A | 0.18 | 0.15 | 4.91 | 1.16 | MUSTER | | RRPDQFTVLVRNVPPDPDSELVEHFFLVNHPDN-YLTHQVVCNANKLADLVSKKTKLQNWLDYYQLKYTRNNSQIR---------------------AIEHYIAEVDKTSKEIAEERENVVKSVMPASFVSFKTRWAAAVCAQT---------------TQTR-----NPTEWLTEWAAEPRDIYWPNLAIPYVSLTVRRLVMNVAFFFLTFFFIIPIAFVQSLATIKS---LIQGLLAGIALKLFLIFLPAILMTMS |
6 | 6oceA | 0.21 | 0.18 | 5.80 | 3.77 | HHsearch | | RRPDQFTVLVRNIPPDPDEELVEHFFLVNHPD-HYLRHQVVYNANKLADLVEKKKKLQNWLDYYQLKYERNSKRPTTKTGFL------GCFG-SEVDAIEYYKAEIEKIGKEEADERQKIMQSAVPAAFVSFRSRWGAAVCA--------------Q-TQQTS-----NPTVWITEWAPEPRDVYWNNLSIPFVSLTVNFFYVIPIAFVQSLASLEGIEKLPFLKPLI-KIDFIQGFLPGIALKVFL-ILLPTILFEG |
7 | 5yd1A1 | 0.21 | 0.14 | 4.30 | 1.73 | FFAS-3D | | ------TVLVRNVPPDPDSELVEHFFLVNHPDN-YLTHQVVCNANKLADLVSKKTKLQNWLDYYQLKYTRNNS--------------------QIRPAIEHYIAEVDKTSKEIAEERENVVNDQMPASFVSFKTRWAAAVCAQTTQTRNPT--------------------EWLTEWAYPLQEAMMKDTLERAREPNLNLKGYLQDA---YIHPV------------------------------------------- |
8 | 6oceA | 0.12 | 0.11 | 3.80 | 0.90 | EigenThreader | | RPDQFTVLVRNDPDESISELVEHFFLVN--HPDHYLRHQVVYNANKLADLVEKKKKLQNWLDYYQLKYERNPSKRPTTKTGFLGCFGSEVDAIEYYKA------EGKEEADERQKIM-KDPQSAVPAAFVSFRSRWGAAV-----------CAQTQQTSNPTVW---------ITEWAPEPRDVYWNNLSIP-----FVSLTVRRLIVAVAFFFLNFFYVIPIAFVQSLASLENVFLGSIVTGSALDQLKAYIHQSAN |
9 | 6llaA | 0.08 | 0.06 | 2.42 | 0.62 | CNFpred | | --AGQRAMIVTNELAPLYLHKIQTVLEVS--GVKVDSIILPDGE--QYKSLFIMNDVFTALLEKHH----------------RDTTLIALGGGVIGDLTGFAAASYQ-----------------RGVRFIQVPT--TLLSQVDSSVGGKTAVNH----LGKNMIGAFYQPASVVIDLD------CLKTLPKRE-----LSSGLAEVIKYGIILDGEFFSWLEENIDALMDNQAMAYCIRRCCELKAQV---------- |
10 | 5yd1A | 0.22 | 0.13 | 4.03 | 0.83 | DEthreader | | AERPDFTVLVRNVPPETVSELVEHFFLVNHPDN-YLTHQVVCNANKLADLVSKKTKLQNWLDYYQLKYT-RN-NSQIRP-----------------A-IEHYIAEVDKTSKEIAEERENVVNKVMPASFVSFKTRWAAAVCAQTTQ-TR--N-----------------PTEWLTEWAAEPRDIYWPNLA-------------------------------------------------------------G------ |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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