Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440
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| SS Seq | CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCC MERLRDVRERLQAWERAFRRQRGRRPSQDDVEAAPEETRALYREYRTLKRTTGQAGGGLRSSESLPAAAEEAPEPRCWGPHLNRAATKSPQSTPGRSRQGSVPDYGQRLKANLKGTLQAGPALGRRPWPLGRASSKASTPKPPGTGPVPSFAEKVSDEPPQLPEPQPRPGRLQHLQASLSQRLGSLDPGWLQRCHSEVPDFLGAPKACRPDLGSEESQLLIPGESAVLGPGAGSQGPEASAFQEVSIRVGSPQPSSSGGEKRRWNEEPWESPAQVQQESSQAGPPSEGAGAVAVEEDPPGEPVQAQPPQPCSSPSNPRYHGLSPSSQARAGKAEGTAPLHIFPRLARHDRGNYVRLNMKQKHYVRGRALRSRLLRKQAWKQKWRKKGECFGGGGATVTTKESCFLNEQFDHWAAQCPRPASEEDTDAVGPEPLVPSPQPV |
1 | 5yfpB | 0.05 | 0.05 | 2.19 | 1.35 | SPARKS-K | | KRIWTQIENLLVTYKDLIWNSLINSNFNI--DQPQETILSLFSKLLNLENFIKNTTSSSNENGHMISKIIHSQR---------LILQNNTNQDKSQGCVELSYYLKINQLFQII-------------------SDTGKDSEGLKSTVEPNKVNTISGTSYLNLNCQPSSQGMWLLILKYINDLWKICIEFWEHIEKFLDGTYQNSIINEKRKENILIGDSNIIESYQKSLILKEEQINEVRLKGEEFITSVSQNLISFFTSSQSSLPSSL-------KDSTGDITRSNKDSGSPLDYGFIPPSTELAQLNITTNGITICRNTLSTIINRCVGYQLENWQVYETVTFSSKS--------QDSSKNLTFEYGVTQFPEIVTTRDLLFAYEKLPIINGISVVSYPSKQLLTGIEIQQIISMEAVLEAILKNAAKDKDNPRNSH |
2 | 5wlcLT | 0.06 | 0.06 | 2.65 | 1.37 | MapAlign | | --TFYIVTCVGKTFQ-IYDANTLHLLTPSSIVALSAHFHYVYAAYENKVGIYKRGIEEHLLELETDANVEHLCIFGDYLCASTDDNSIFIYKKSDPQDKYPSEFYTKLTVTEIQGGEIVSLQHLATYLNKLTVVTKSNVLLFNVRTGKLVFTSNEFPDQITTAEPAPVLDIIALGTVTGEVIMFNMRKGKR-IRTIKIPQSRISSLSFRTDGSSHLSVGTSSGDLIFYDLDRRSRIHVLKNIHRESYGGVTQATFLNGQPIIVTSGGDNSLKEYVHSQPPSYIAFADSQSHFMLSASKDRSLWSFSLRITAHKDEKFARTWDMRNKRVGRWTFDTTDDGFVKSVAMSQCGNFGFIGSSNGSITIYNMKSTLLGKLKLDAPITAMVYHRSSDLFALALDDLSIVVIDAVTQRVVRQLWGHWIVSASLDSTIRTWDLPTGGC |
3 | 2nbiA1 | 0.16 | 0.13 | 4.47 | 1.16 | MUSTER | | ------------------------QPSDLNPSSQPSECADV------LEECPIDECFLPYSDASRPPSCLSFGRPDC---------DVLPTPQNINCPRCCAT-----------ECRPDNPMFTPSPDGSPPICSPTMLPTNQPTPPEPSAPSDCGEVIEECPLDTCFLPTSDPARPPDCTAVGRPDCD-----VLPFPNNLGCPACCPFECSPDNPMTPSPDGSPPNCSPTMLPTPQPSTPTVITSPAPSSQPSQCAEVIEQCPIDECFLPYGDSSRPLDCTDPAVNRPD-----DVLPTPQNINCPACCAFECRPDNPMFTPSPDGSPPICSPTMMPSPEPSSQPSDCGEV----IEECPIDACFLPKSDSARPPDCTAVGRPDCNVLPFPNNIGCPSCCPFECPSPDGSPPNCSPTMLPSPSPSAVTVPLTPAPAPT |
4 | 2kmuA | 1.00 | 0.12 | 3.44 | 2.59 | HHsearch | | MERLRDVRERLQAWERAFRRQRGRRPSQDDVEAAPEETRALYREYRTLKRTTGQ-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
5 | 5wlcLT | 0.06 | 0.06 | 2.53 | 0.84 | CEthreader | | MRKGKRIRTIKIPQSRISSLSFRTDGSSHLSVGTSSGDLIFYDLDRRSRIHVLKNIHRESYGGVTQATFLNGQPIIVTSGGDNSLKEYVFDPSLSQGSGDVVVQPPRYLRSRGGHSQPPSYIAFADSQSHFMLSASKDRSLWSFSLRKDAQSQEMSQRLHKKQDGGRVGGSTIKSKFPEIVALAIENARIGEWENIITAHKDEKFARTWDMRNKRVGRWTFDTTDDGFVKSVAMSQCGNFGFIGSSNGSITIYNMQSGILRKKYKLHKRAVTGISLDGMNRKMVSCGLDGIVGFYDFNKSTLLGKLKLDAPITAHRSSDLFALALDDLSIVVIDAVTQRVVRQLWGHSNRITAFDFSPEGRWIVSASLIRTWDLPTGGCIDGIIVDNVATNVKFSPNGDLLATTHVTGNGICIWTNRAQFKTVSTRTIDESEFLNDIDFN |
6 | 6gmhQ | 0.05 | 0.05 | 2.41 | 0.77 | EigenThreader | | GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGVEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASSSFVLPFFGLGQMYIYRGQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDDIQGALSAYGTATRILQEKVQADVPNLGEAKKYFLASLDRAKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQSDTYSMLALGNVWLQTLHQPTDAKNLYAANGIGAVLAHKGYFREARDVFAQVREAVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVVLYLARALFKCGKLQECKQVAPSDTVLMF |
7 | 2kmuA | 1.00 | 0.12 | 3.44 | 0.77 | FFAS-3D | | MERLRDVRERLQAWERAFRRQRGRRPSQDDVEAAPEETRALYREYRTLKRTTGQ-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
8 | 5jcss | 0.09 | 0.08 | 3.19 | 1.33 | SPARKS-K | | IDSYKNVKSIYMNTKFISLNKHTRVVSV----------RDLIKLCERLDILFKNNGINKPDQLIQSSVYDSIEAADCFAG-----AIGEFKAL-------------EPIIQAIGESLDIASSRISLFLTQHVPTLENLDDSIKIGRKEKLNIQKKSMNSTLFAFTNHSLRLMEQISVTVVQQLAKYKPK-----TVAVPIQENFETLFNATFSLKKNEKFHKMLHRCFNKNQWKNVVKLWNEAYKMAQSILKITNTENEKKRRLNTHEKKLNDSVKKFEAQSSSIENSFVFNFVKTIRAGELDEVNLATADTLESISDLLTEPDSRSILLSEKGDAEPIKAHPDFRIFACMNFTEIYVHSPERVSDEWVGNDIAELYLEAKKLSDNNTIVDGSNQKPHTDII--HIYGLRRYDGFCMSFLTLLDQKSGRLKNVKSIMSYI |
9 | 5j1gA | 0.15 | 0.06 | 2.06 | 0.54 | CNFpred | | ISELKDIRLQLEACETRTVHRLRLPLPARECAQRIAEQQKAQAEVEGLGKGVARLSAEAEKVLALPEPSPAAP----LRSELELTLGKLEQVRSL------SAIYLEKLKTISLVIRGT---------QGAEEVLRAHEEQLKEAQAVPATLPELEATKASLKKLRAQAEAQQPTFDALRDELRG-AQEVGERLQQ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
10 | 3hmjG | 0.04 | 0.03 | 1.37 | 0.67 | DEthreader | | --VPG-MTPCTVS----------GYFSAAGMTAAIVTFGINLIYVLIGAGVPSLE---------PGSIDAIVIIALQWT--HMLQMYSKIRR------HP-NIMLI--YPYLTGEWSTK----GVPDDK-----------------------------------QFTKIDGIHDGHIKKLLYYEKIPAV-GGESPVKAGSEINWRHGTSSKTV--VTLSEPVPTVILKLLKIIQMEMIENVSLPL-Y-------------------MEDRNQRIKEMYWKLWIDEPFNLDFDPR---------D-VIKGKDFE-ITAKEVYDF--------------VGDVVSLSPMEVTVEP--QLDD---------PIKVELTKETADVMSESLVEVVYRTFFKKIKENVKVLIPNLT---FQVTKEYFQDVYDL--TGSIKIDNWKQ |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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