Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440
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| SS Seq | CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSCSSCCCCHHHHHHHHHCCCCCCCCCCHHHCSSSSSSCCSSSSSSCCCCCCSSSSSCCCCSSSSSSSSCCCCCCCCCCCCSSSSSSSCCSSSSSSSSSCCCCCCCCCCCCCCCCCSSSSCCCCSSSSCCCCSSCCCCCCCCCCCCCCSSSSSSSCCCSSSSSSCCCCCCSSSSSSCCCCCCCCCCSSSSCCCCCCCCCSSSSSCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCSSSSSSCCCSSSSSSCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC MPSSLLGAAMPASTSAAALQEALENAGRLIDRQLQEDRMYPDLSELLMVSAPNNPTVSGMSDMDYPLQGPGLLSVPNLPEISSIRRVPLPPELVEQFGHMQCNCMMGVFPPISRAWLTIDSDIFMWNYEDGGDLAYFDGLSETILAVGLVKPKAGIFQPHVRHLLVLATPVDIVILGLSYANLQTGSGVLNDSLSGGMQLLPDPLYSLPTDNTRLPPGFSASSTVEKPSKVHRALYSKGILLMAASENEDNDILWCVNHDTFPFQKPMMETQMTAGVDGHSWALSAIDELKVDKIITPLNKDHIPITDSPVVVQQHMLPPKKFVLLSAQGSLMFHKLRPVDQLRHLLVSNVGGDGEEIERFFKLHQEDQACATCLILACSTAACDREVSAWATRAFFRYGGEAQMRFPTTLPPPSNVGPILGSPVYSSSPVPSGSPYPNPSFL |
1 | 5haxA | 0.17 | 0.13 | 4.33 | 1.00 | DEthreader | | -----------------D--LPPVAKAAQVVNQTLQLD--DSYPD-LDSYC--RPG-ASSDY-EMQS-------DSSWAPFHVVRHHNIPDKVFEHLNAGEVFTKLGLFAEIGYAWASIDSSLFLWDYTHPPELIGYEEATHTITAVALVPPKPGVFVKTITHVLVVATTSEIILLGVSATP----TP--SG-KSLTLYSTRMSRIFLILYYLMALGCPPRDTSRALDPSALGFRFSPGYFFDVVRKHP-NQDMLFVSAPDTGRIKYFEQGTWIELEGNRTIEIGLTT-AP-FA--A-A---KQPLGFGNELAVQFDQVPGEFAVLTNTGVHIVRRRRLVDIFAKALGNCADALEREVRKFIN-QYG--RVETIAAALAVCGSRENLARAAFIEYGGQPSSR----------------------------------------- |
2 | 5haxA | 0.23 | 0.21 | 6.46 | 2.46 | SPARKS-K | | ------------------DLPPVAKAAQVVNQTLQLDDSYPDLDSYC------RPGASS--DYEMQSSD------SSWAPFHVVRHHNIPDKVFEHLNAGEVFTKLGLFAEIGYAWASIDSSLFLWDYTHPNELIGYEEATHTITAVALVPPKPGVFVKTITHVLVVATTSEIILLGVSATPTPSGSKFIVGTKDGRIFLGGEWLRGLYVDDTKFPPRESPTRIRTLDPSALGFRFSPGYFFDVVRKHPNQDMLFVSAPDTGRSALKYFEQGTWIELENRTIEIGLTTAPF------AAAKQ--PLGFGNELAVQFDQVPGEFAVLTNTGVHIVRRRRLVDIFAKALGNCVSASEREVRKFINQYGRVETIAAALAVACGQGSMDRNTENLARAAFIEYGGQPRLASVRLSSRHDALALYLTRLVRTLWKAKVVQVDISSTIP |
3 | 5haxA | 0.17 | 0.16 | 5.17 | 2.00 | MapAlign | | --------------------LPPVAKAAQVVNQTLQLD-------------DSYPDLDSYCRPGASSDYEMQSSDSSWAPFHVVRHHNIPDKVFEHLNAGEVFTKLGLFAEIGYAWASIDSSLFLWDYTPNPELIGYEEATHTITAVALVPPKPGVFVKTITHVLVVATTSEIILLGVSATSFIVGTKDGRIFLGGLYVDDTRNLLYSLEASKLHLMALTDTGCRLALDPSALGFRFPGYFFDVVRKHPNQDMLFVSAPDQPASALKYFEQGTWIELGNRTIEIGLT----TAPFAAAKQPLGFG----NELAVQFDQVPGEFAVLTNTGVHIVRRRRLVDIFAKALGNCVDALEREVRKFINQYGRVETIAAALAVAGQGSDLMRNTENLARAAFIEYGGQPRLASVRLSSRHDALALYLTRLVRTLWKAKVVQVDISSTI- |
4 | 5haxA | 0.20 | 0.18 | 5.72 | 1.56 | CEthreader | | ------------------DLPPVAKAAQVVNQTLQLDDSYPDLDSYCRPGASSDYEMQSSDSS--------------WAPFHVVRHHNIPDKVFEHLNAGEVFTKLGLFAEIGYAWASIDSSLFLWDYTHPPELIGYEEATHTITAVALVPPKPGVFVKTITHVLVVATTSEIILLGVSANRSTIRTYHMEGPEKLTKVIESLAPQSMQLQFVKFPPRELDKTSRALDPSALGFRFSPGYFFDVVRKHPNQDMLFVSAPDTGRIKLKYFEQGTWIELENRTIEIGLTTAPFAAAKQPL--------GFGNELAVQFDQVPGEFAVLTNTGVHIVRRRRLVDIFAKALGNCVSASEREVRKFINQYGRVETIAAALAVACGQGSMDRNTENLARAAFIEYGGQPRLASVRLSSRHDALALYLTRLVRTLWKAKVVQVDISSTIP |
5 | 5a9qA | 0.86 | 0.75 | 21.04 | 1.32 | MUSTER | | -------------------QEALENAGRLIDRQLQEDRMYPDLSELLMVS-------SGM-DMDYPLQL---LSVPNLPEISSIRRVPLPPELVEQFGHMQCNCMMGVFPPISRAWLTIDSDIFMWNYEDGGDLAYFDGLSETILAVGLVKPKAGIFQPHVRHLLVLATPVDIVILGLSYANLKDGKSSLSFSLLQFTFSEDDPILQIAIDNSRLPPGFSASSTVEKPSKVHRALYSKGILLMAASEND-NDILWCVNHDTFPFQKPMMETQMTAGVDGHSWALSAID--------TPLNKDHIPITDSPVVVQQHMLPPKKFVLLSAQGSLMFHKLRPVDQLRHLL--------VEIERFFKLHQEDQACATCLILACSTC--DREVSAWATRAFFRYGGEA---------QMRFTTLPVYSGKHNDASLVVESSVPCQLLE |
6 | 5haxA | 0.23 | 0.21 | 6.58 | 6.60 | HHsearch | | ------------------DLPPVAKAAQVVNQTLQLDDSYPDLDSYCRPG------AS--SDYEMQSS-D-----SSWAPFHVVRHHNIPDKVFEHLNAGEVFTKLGLFAEIGYAWASIDSSLFLWDYTHPPELIGYEEATHTITAVALVPPKPGVFVKTITHVLVVATTSEIILLGVSATPTPSGTGKINHSHPF-GSRQQEWLRGLYVDDTKFPPRESPTRIRDKTPSALGFRFSPGYFFDVVRKHPNQDMLFVSAPDTGASALKYFEQGTWIELENRTIEIGLTTAPFAAA--------KQPLGFGNELAVQFDQVPGEFAVLTNTGVHIVRRRRLVDIFAKALGNCVSASEREVRKFINQYGRVETIAAALAVACGQGSMDRNTENLARAAFIEYGGQPRLASVRLSSRHDALATRLVRTLWKAKVVQVDILEANKSTI |
7 | 4mhcA | 0.20 | 0.17 | 5.56 | 2.10 | FFAS-3D | | --------------------EPLQLASEFVQDLSFRDRNTPILDNPDYYSKG--------LDYNFSDEVG---GLGAFTPFQRQQVTNIPDEVLSQVSNTEIKSDMGIFLELNYCWITSDNKLILWNINNSSEYHCIDEIEHTILKVKLVKPSPNTFVSSVENLLIVATLFDIYILTISFNDRTHELNIFSNRAFKIAKIVSISIGSLKLDSVKFPPTSGPASSTYINTTCASTIISPGIYFTCVRKRAE-HKLYVSAPDYGILKGKYVENTALLDTTDEIKEIVPL--------TRSFNYTSTPQGYANVFASQYSAEPLKVAVLTSNALEIYCYRTPDEVFESLI--------ENPLPFIHSYGLSEACSTALYLACKFN--KSEHIKSSALAFFSAGIPGVVEIKPKSVLSPRFSQIWEERVFVGISITRPQ-------- |
8 | 5haxA | 0.17 | 0.15 | 4.91 | 1.50 | EigenThreader | | -------------DLPPVAKAAQVVNQTLQLDD--------------------------SYPDLDSYCRPDYSDSSWAPFH-VVRHHNIPDKVFEHLNAGFTKLGLFAEI--GYAWASIDSSLFLWDYHPNPELIGYEEATHTITAVALVPPKPGVFVKTITHVLVVATTSEIILLGVSATPTPADSSPLFTDKTNTGCTSSASYLQFVKFPPRESPTRIRTLSQLDKTSALGFRFSPGYFFDVVRKHPNQDMLFVSADQPASALKYFEQGTWIELENGNRIEIGLTTAPFAAAKQPLGFGNELAVQFD--------QVPGEFAVLTNTGVHIVRRRRLVDIFAKALGNCVSASEREVRKFINQYGRVETIAAALAVACGQSDLMDRNTENLARAAFIEYGGSVRLSSRHDALALYLTRLVRTLWKAKVANKSTIQGLAPPDI |
9 | 5haxA | 0.24 | 0.20 | 6.18 | 2.85 | CNFpred | | -------------------LPPVAKAAQVVNQTLQLDDSYPDLDSYCR--------PGASSDYEMQSS------DSSWAPFHVVRHHNIPDKVFEHLNAGEVFTKLGLFAEIGYAWASIDSSLFLWDYTHPPELIGYEEATHTITAVALVPPKPGVFVKTITHVLVVATTSEIILLGVSATPTPSGSKSLTDTDIHEIFYQ-EWLRGLYVDDTKFPPRESP-KTSRADPSALGFRFSPGYFFDVVRKHPNQDMLFVSAPDTGR-ALKYFEQGTWIELENRTIEIGLTTAPFAAAK--------QPLGFGNELAVQFDQVPGEFAVLTNTGVHIVRRRRLVDIFAKALGNCVSALEREVRKFINQYGRVETIAAALAVACGQG-MDRNTENLARAAFIEYGGQPRLA------------------------------------- |
10 | 5a9qA | 0.63 | 0.49 | 13.87 | 1.00 | DEthreader | | Q--------------------EALENAGRLIDRQLQED--RMYPD-LSE-L--LMVSSGMDM-DYPL-----S-VPNLPEISSIRRVPLPPELVEQFGHMQCNCMMGVFPPISRAWLTIDSDIFMWNYEDGGDLAYFDLSETILA-VGLVKPKAGIFQPHVRHLLVLATPVDIVILGLSYAN---------LSGGMQLLPDPLLRIFLIATIAAVRRLPPGSASTVEKPSKVHRALYSKILLMAASEN-DNDILWCVNHDTFPFQKPMMETQMTAGVDGHSWALSAID--TPLN--K-D---HIPITDSPVVVQQHMLPPKKFVLLSAQGSLMFHKLRPVDQLRHLL--V------EIERFFK-LH--QEDQACATCLILCSTDAWATRAFFRYGGQMRFTTL---------------------------------------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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