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Template proteins with similar binding site:
Click to view | Rank | CscoreLB | PDB Hit | TM-score | RMSDa | IDENa | Cov. | BS-score | Lig. Name | Download Complex | Predicted binding site residues |
| 1 | 0.44 | 3l9lA | 0.390 | 2.12 | 0.353 | 0.405 | 1.67 | L9L | complex1.pdb.gz | 55,60,63,79,81,131,132,133,134,138,181,182,184,194,195,348 |
| 2 | 0.38 | 3ovvA | 0.390 | 1.93 | 0.362 | 0.404 | 1.42 | 1SB | complex2.pdb.gz | 58,59,60,61,62,63,79,81,83,132,133,134,194,195 |
| 3 | 0.38 | 1svgA | 0.390 | 1.94 | 0.355 | 0.404 | 1.40 | I04 | complex3.pdb.gz | 56,57,58,59,60,62,63,79,81,83,94,101,132,134,138,181,182,184,194,195,197,198,348 |
| 4 | 0.37 | 3nx8A | 0.389 | 2.02 | 0.363 | 0.404 | 1.46 | IPH | complex4.pdb.gz | 56,57,63,138,181,182,194 |
| 5 | 0.37 | 2uw8A | 0.390 | 1.96 | 0.356 | 0.404 | 1.55 | GVQ | complex5.pdb.gz | 55,56,57,61,62,63,79,138,181,182,194,348 |
| 6 | 0.36 | 3mvjA | 0.390 | 2.13 | 0.363 | 0.405 | 1.55 | XFE | complex6.pdb.gz | 55,63,79,132,134,138,184,194,348 |
| 7 | 0.32 | 1q62A | 0.391 | 1.91 | 0.358 | 0.404 | 1.37 | III | complex7.pdb.gz | 59,60,94,138,140,141,144,179,180,181,198,214,215,216,217,218,247,251,252,253,256,257,267,268,350 |
| 8 | 0.23 | 2uvxA | 0.390 | 1.96 | 0.356 | 0.404 | 1.14 | GVH | complex8.pdb.gz | 55,62,80,115,131,132,133,134,184,194,348 |
| 9 | 0.22 | 3c4xB | 0.381 | 2.84 | 0.294 | 0.404 | 1.52 | ATP | complex9.pdb.gz | 55,56,58,59,63,79,81,132,134,184,195 |
| 10 | 0.22 | 3aglA | 0.389 | 2.06 | 0.361 | 0.404 | 1.36 | A03 | complex10.pdb.gz | 58,59,60,61,63,79,83,115,131,132,134,138,140,144,180,181,184,194,198,218,247,253,348,352 |
| Click on the radio buttons to visualize predicted binding site and residues. |
(a) | CscoreLB is the confidence score of predicted binding site. CscoreLB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction. |
(b) | BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
| (c) | TM-score is a measure of global structural similarity between query and template protein. |
(d) | RMSDa the RMSD between residues that are structurally aligned by TM-align. |
(e) | IDENa is the percentage sequence identity in the structurally aligned region. |
(f) | Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein. |
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