Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140
| | | | | | | |
| SS Seq | CSSSSSSCCCSSSSSSCCCSSSSCCCCCCSCCCCCCCCCCCCCCCSSSSSSSCCCCCSSSSSCCCCSSSSSSCCCSSSSSCCCCCCCCCCCCCCCCSSSSSSCCCCCSSSSSSCCCSSSSSSCCCCCCCSSSSSCCCCCCCCCCCCCCCCSSSSSSSSC RVACMTSNQSSTLYVTDQGGVYFEVHTPGVYRDLFGTLQAFDPLDQQMPLALSLPAKILFCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQVCYLQRPITLWCGLNHSLVLSQSSEFSKELLGCGCGAGGRLPGWPKGSASFVKLQVKV |
1 | 3kciA | 0.24 | 0.22 | 6.86 | 1.33 | DEthreader | | FIKKVAVNGKHCLALSSEGEVYSWG----EA--EDGKGGNR--SPCDRPRVIELGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALGRVVDIACGSAQTLCLTDD----DTVWSWGDGDYGKLGRGGS-DGCKMKIDLLV |
2 | 4jhnA1 | 0.24 | 0.22 | 6.86 | 2.23 | SPARKS-K | | VPVHLSCGDEHSAVVTGNNKLYMFGSNN------WGQLGLGSKSAISKPTCVKKPEKVKLAACGRNHTLVSTEGGNVYATGGNNEGQLGLGDTEERNTFHVISFFTKIKQLSAGSNTSAALTED----GRLFMWGDNSEGQIGL-KNVSNVCVPQQV-- |
3 | 4jhnA | 0.24 | 0.22 | 6.87 | 0.68 | MapAlign | | VPVHLSCGDEHSAVVTGNNKLYMFGS------NNWGQLGLGSKSAISKPTCVALPEKVKLAACGRNHTLVSTEGGNVYATGGNNEGQLGLGDTEERNTFHVISFFHKIKQLSAGSNTSAALTED----GRLFMWGDNSEGQIGLKNVSNV-CVPQQVT- |
4 | 4jhnA1 | 0.23 | 0.21 | 6.69 | 0.54 | CEthreader | | VPVHLSCGDEHSAVVTGNNKLYMFGS------NNWGQLGLGSKSAISKPTCVLKPEKVKLAACGRNHTLVSTEGGNVYATGGNNEGQLGLGDTEERNTFHVISFFHKIKQLSAGSNTSAALTED----GRLFMWGDNSEGQIGLKNVS-NVCVPQQV-- |
5 | 4dnuA2 | 0.28 | 0.26 | 7.89 | 2.20 | MUSTER | | RIKQIACGDSHCLAVT-EGEVQSWG------RNQNGQLGLGDTEDSLVPQKIQAFEGIIKVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKSVACGWRHTISVSYS----GALYTYGWSKYGQLGHGDLED-HLIPHKLEA |
6 | 3of7A | 0.19 | 0.18 | 5.69 | 1.83 | HHsearch | | HVKYIASGENHCFALTKDNKLVSW----G--LNQFGQCGVSEDALVTKPKRLALPDVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPPLPTKLNNVPKFKSVAAGSHHSVAVAQN----GIAYSWGFGETYAVGLGPFEDDTEVPTRIKN |
7 | 5xgsA2 | 0.18 | 0.17 | 5.52 | 1.72 | FFAS-3D | | RVLQVSCGRAHSLVLTDREGVFSM------GNNSYGQCGRKVVENERVHRMQDFDGQVVQVACGQDHSLFLTDKGEVYSCGWGADGQTGLGHYNITSSPTKLGGDVNVIQVATYGDCCLAVSADGG----LFGWGNSEYLQLASVTDSTQVNVPRCLH- |
8 | 4jhnA2 | 0.19 | 0.18 | 5.87 | 0.70 | EigenThreader | | PVSWISCGYYHSAFVTTDGELYVFGEPENGKLG----LPNQLLGNHRTPQLVEIPEKVIQVACGGEHTVVLTE-NAVYTFGLGQFGQLGLGTFLFESEPKVIENIRTISYISCGENHTALITD----IGLMYTFGDGRHGKLGLGLENFTNTLCSNFLR |
9 | 4d9sA | 0.25 | 0.23 | 7.21 | 2.65 | CNFpred | | RIKMVAAGAEHTAAVTEDGDLYGWGWG------RYGNLGLGDRTDRLVPERVTSGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSFISQISGGWRHTMALTSD----GKLYGWGWNKFGQVGVGNN-LDQCSPVQVRF |
10 | 5gwnA | 0.26 | 0.24 | 7.38 | 1.33 | DEthreader | | RVRTVVSGAAHSLLITTEGKLWSWG----RNE--KGQGGDT--KRVEAPRLIELHEVIVSAACGRNHTLALTETGSVFAFGENKMGQLGLGNQTAVPSPAQIMYNQPITKMACGAEFSMIMDC----KGNLYSFGCPEYGQLGHSDKFYDCERRVAFVV |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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