Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Download alignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420
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| SS Seq | CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC HDKVIDLTPPWEHYCTKDVNPSILFSSHQEHQDTLALGGQAPIDIPPDNPRHYGQSGFFASLCWQDQKSEKSFCEEDHAALVNQESEQSDDELLTLSSPHGNANGDKPHGVKKPSKKQQEPAAPPPPEDVDLLGLEGSAMSNSFSPPAAPPTNSELLSDLFGGGGAAGPTQAGQSGVEDVFHPSGPASTQSTPRRSATSTSASPTLRVGEGATFDPFGAPSKPSGQDLLGSFLNTSSASSDPFLQPTRSPSPTVHASSTPAVNIQPDVSGGWDWHAKPGGFGMGSKSAATSPTGSSHGTPTHQSKPQTLDPFADLGTLGSSSFASKPTTPTGLGGGFPPLSSPQKASPQPMGGGWQQGGAYNWQQPQPKPQPSMPHSSPQNRPNYNVSFSAMPGGQNERGKGSSNLEGKQKAADFEDLLSGQGFNAHKDKKGPRT |
1 | 5jcss | 0.11 | 0.10 | 3.77 | 1.37 | SPARKS-K | | TSGDKPGTFEWRAAVKEGR--WVLIAPTDVLSILLSLLEKRELTI-PSRGETVKAANGFQLISTVRINEDHQKDSSNKIYNLNELEEPSEEDLTHILAQKFPILTNIYMNTKFISLNKGAH--TRVVSVRDLIKLDILFKNNGINKPDQLIQSSEAADCFAGAIGEFKALEPIASSRISLFLTQHVPTLENLDDSIKIGRAVLLKEKLNIQKKSMNSTLFAFTNHSLRLMEQISVCIQMTEPVQQLAKMLAKKLTVINVSQQTETGDLLGGYKPKTVAVPIATFSLKKNEKFHKMLHRCFNKNQWKNVVKLWNEAYKMAQSILKITNTEENENAKKKKRRLNTHEKKLLLDKWADFNDSVKKFEAQSSSIENSFVFNVKTIRAGEWLLLSDLLTEPDSRSILLSEKGDAKAHPDF------RIFANPATDVGKRD |
2 | 5i8iA | 0.05 | 0.05 | 2.27 | 1.11 | MapAlign | | -------------PFETVLIANRGEIAVRIMKTLKRMGIKSVAVYSDPDKYSQHVFSVALHGRTAAETYLDIDKIINAAKKCSQENIVFVGPSGDAIRKLGLKHSAREIAERAKVPLVPNARHVEIQMMGDGFGKAILPEATRAKMRAASERLGSLLKYKCAGTVEFIYDEQRDEFYFLEVNARLQVEHPITEMVTGLDLVEWMLRIAANDSPDFDNTTFAMGNMGGYNGRIIGPKPKWARSDGGEAGLHPSNAHDYVYSLGAINFTGDEPVIIPKVTYRQAGDRYILVEYGELEFDLNICYRINRLIHQVERHQTVGIVEMSQGVRSVLIEFDSAKFMVLGLGDVFLGSPCAVPLYMCIYNAEGSPGGYQLVGRTITAWDKLVIGDHPIDHPWLLTPFDQVEFYPVTEEELEVIIEDNDNGKFKIDVEESIF-- |
3 | 2nbiA | 0.13 | 0.12 | 4.34 | 1.05 | MUSTER | | --QPSDLNPSSQPSECADVLEECPIYSDASRPPSCLSFGRPDCDVLPTPQNINCPRCCATECRPDNPMFTPSPDGSPPICSPTMLPTNQPTPPEPSSAPSDCGEVIEECPLDTCFLPTSDPARPPDCTAVGRPDCDVLPFPNNLGCPACCPFECSPDNPMFTPSPDGSPPNCSPTMLPTPQPSTPTVITSPAPSSQPSQCAEVIEQFLPYGDSSRPLDCTDPAVNRPDCDVLPTPQNINCPACCAFECRPDNPMFTPSPDGSPPSPTMMPSPEPSSQPSDCGEVIEECPIDACFLPKSDSARPPDCTAVGPDCNVLPFPNNIGCPSPDNPTPSPDGSPPNCSPTMLPSPSPSAVTVPLTPAPSSAPTRQPSSQPTGPQPSSQPSEPFDDSSRPPDCTDPSVNRPDCDKLSTAIDFT--CPTQCFSPSPDGSPPVC |
4 | 1n4cA | 0.86 | 0.14 | 3.95 | 4.06 | HHsearch | | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GPLGSPEFSMPHSSPQNRPNYNVSFSSMPGGQNERGKAAANLEGKQKAADFEDLLSGQGFNAHKDKKGPRT |
5 | 1gxdA | 0.09 | 0.09 | 3.36 | 0.56 | CEthreader | | PSPIIKFPGDVAPKTDKELAVQYLNTFYGCPKESCNLFVLKDTLKKMQKFFGLPQTGDLDQNTIETMRKPRCGNPDVANYNFFPRKPKWDKNQITYRIIGYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWTLGEGQVVRVKYGNADGEYCKFPFLFNGKEYNSCTDTGRSDGFLWCSTTYNFEKDGKYGFCPHEALFTMGGNAEGQPCKFPFRFQGTSYDSCTTEGRTDGYRWCGTTEDYDRPETAMSTVGGNSEGAPCVFPFTFLGNKYESCTSAGRSDGKMWCATTANYDDDRKGHAMGLEHSQDPGALMAPIYTYTKNFRLSQDDIKGASPDTPTLGPVTPEICKQDIVFDGIAQIRGEIFFFKDRFIWRTVTPRDKPM |
6 | 5cqrA | 0.07 | 0.07 | 2.74 | 0.72 | EigenThreader | | -----------------------HHRALVLAQIRKWLDKLMFKEAFECMRKLRINLNLIYDHNVFLGNVETFIKQIHINLFFTELDGNKIDLVCDAMRAVMESINPHKYCLSILTSHVKKTTPELEIVLQKVHELQGNAPSDPDAVSAEEALKYLLHLVDVNELYDHSLGTYDFDLVLMVAEKSQKEYLPFLNTLKKMETNYQRFTIDKYLKRHLSKCGPEYFPECLNLIKDKNLYNEALKLYSPSSQQYQDISIAYGEHLMQEHM----YEPAGLMFARCGAHEKALSAFLTCGNWKQALCVAAQLNFTKDQLVGLGRTLAGKLVEQRKHIDAAMVLEECAQDYEEAVLLLLEGAAWEEALRLVYKYNRLDIIETNVKPSILEAQKNYMAFLDSQTATFVVQNTENLKDEVYHILKVLFLFEFNRRTQWKLSLL |
7 | 2xd8A | 0.09 | 0.07 | 2.58 | 0.67 | FFAS-3D | | ---------------MANANQ--------------VALGRSNLSTGTGYGGATDKYALYLKL--FSGEMFKGFQHETIARDLVTKRTLKNGKSLQFIYTGRMTSSFHTPGTPILGNADKAPPVAEKTIVMDDAFVYDLDETLAHYELRGEISDRLIFRSITRGARSASPVSATN-------------FVEPGGTQIRVGSGTNESDAFTASALVNAMDEKGVSSQGRCA--VLNPRQYYALIQDIGSNGLVNRDVQGSALQSGNGVIEIAGIHIYKSMNIPFLGKYGVKYGGTTGETSP-------------------------GNLGSHIGPTPENANATGGVNNDYGTNAELGAKSCGLIFQKEAAGVVEAIGPQVQVTNGDVSVIYGDVILGRMAMGADY--LNPAAA------------------------ |
8 | 2nbiA | 0.12 | 0.12 | 4.13 | 1.33 | SPARKS-K | | SDLNPSSQP----SECADVLEECPI------DECFLPYSDASRPPSCLSFGRPTPQNINCPRCCATECRPDNPMFTPSPDGSPPICSPTMLPTNQPTPPPSSAPSDCGEVIEECPLDTCFLPTSDPARPPDCTAVGRPDDVLPFPNNLGCPAC-----CPFCSPDNPMFTPSPDGSPPNCSPTMLPTPQPSTPTVITSPAPSSQPSQCAEVIEQCPIDECFLPYGDSSRPLDCTDPAVNRPDCDVLPTPQCAFECRPDNPMFTPSPD--GSPPICSPTMMPSPEPSSQPSDCGEVIEECPPKSDSARPPDPDCNVLPFPNNIGCPSCCPFECSPDNPMFTPSPDGSPPNCSPTMLPSPSPSAVTVPQPSSQPSECADVLELCPTCFLPFDDRPPDCTDPSVNRPDCDKLSTAIDFTCCCPTQCFSPSPDGSPPVC |
9 | 2pffB | 0.08 | 0.06 | 2.28 | 0.67 | DEthreader | | ASAL--A----N-----------SYLKVAIAETDSFVSVRKAITLFGVSFHLASDINSRIVCIFGPGGASGVAGTLDINPDDDY-GGGGGGGGGGGGGGG--G----G-G--GGGGGGGGGGGGGGG-------------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG---GGGGGGGGG-----GGG-GGGGGGGGGGGGG-GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG----GGGGGGGGGGGGG-------G---GGGGGG-----K-----PA--D-ATFAGHSLGEYAALASLADVMISLVVFYRGMTMQ----RDELGRSN-F------GG-GGGGGGGGGGGGGGGGGGGGGG--G------------GGGGGGG---------------- |
10 | 2mprA | 0.07 | 0.06 | 2.46 | 1.11 | MapAlign | | -------KYRLGNECETYAELKLGQEVWKEGDKSFYFDTNVAYSVNQQNDWESTDPAFREANVQGKNLIEWLPGSTIWAGKRFYQRHDVHMIDFYYWDISGPGAGIENIDLGFGKLSLAATRSTEAGGSYTIYDEVKDTANDVFDVRLAGLQTNPDGVLELGVDYGRANTTDGYKLADGASKDGWMFTAEHTQSMLKGYNKFVVQYATDAMTTQGKGQARGSDGSSSFTEKINYANKVI-----------NNNGNMWRILDHGAISLGDKWDLMYV-----GMYQNIDWDNNLGTEWWTVGVRPMYKWTPIMSTLLEVGYDNVKSQQTGDRNNQYKITLAQQWQAGDSIWSRPAIRI----------------------------------------------FATYAKWDEKWGYIKDGDNISRYAAATNSGIS |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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