Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| SS Seq | CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCSSSSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC EKQVLSMEKKLDFLVNIYMQRMGIPPTETEAYFGAKEPEPAPPYHSPEDSREHVDRHGCIVKIVRSSSSTGQKNFSAPPAAPPVQCPPSTSWQPQSHPRQGHGTSPVGDHGSLVRIPPPPAHERSLSAYGGGNRASMEFLRQEDTPGCRPPEGNLRDSDTSISIPSVDHEELERSFSGFSISQSKENLDALNSCYAAVAPCAKVRPYIAEGESDTDSDLCTPCGPPPRSATGEGPFGDVGWAGPRK |
1 | 4btgA | 0.13 | 0.13 | 4.34 | 1.12 | SPARKS-K | | SEHELFHHITTDFVCHVLSP-LGFILPDAAYVYRVGRTATYPNF----YALVDCVRASDLRRMLTALSSVDSKMLQATFKAKGALAPALISQHLANAATTAFERSRGNFDANAVVSSPSTPKELDPSARLRNTNGIDQLRSNRGRAEVIFSDEELSSTIIPWFI-----EAMSE------VSPFKLRINETTSYIGSAIDHMGQPSHVVVYEDWQFAKEITAFTPVKLANNSNQRFLDVEPGISDR |
2 | 3bj4B | 0.15 | 0.02 | 0.54 | 1.27 | HHsearch | | EDKVTQLDQRLALITDMLHQLLSLHG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
3 | 6fb3A | 0.06 | 0.06 | 2.54 | 0.54 | CEthreader | | RIIYDQLGRPFLWLPSSGLAAVNVSYFFNGRLAGLQRGAMSERTDIDKQGRIISRMFADGKVWSYTYLEKSMVLLLQSQRQYIFEYDSSDRLHAVTMRHSMSTHTSVGYIRNIYNPPESNASVIFDYSDDGRILKTSFLGTGRQVFYKYGKLSKLSEIVYDSTAVTFGYDETTGVLKMVNLQSGGFSCTIRYRKIGPLVDKQIYRFSEEGMVNARFDYTYHDNSFRIASIKPIISETPLPVDLYRY |
4 | 6tnfB3 | 0.05 | 0.04 | 2.16 | 0.58 | EigenThreader | | TLLTALFRDAVSVALQKVQQLEEMGQTVLLWRYTSIISLLCLEGLLRIFNTMQQLYAARIPQFLQALDITDGDAEEADINVTEKAAFQIRQFQRSLVNQLSSAEDDFNSKETQLLITILSTLSKLLDPGSQQFLQFLTWTVKICKENLYKSPVSLLRELAQDIHACLGD-----IDQDVEIESRSHFAIVNVKTAAPTLGTLLTVFHELVQTALPAGSC------VDSLLRSLSKTYAILTSLIKH |
5 | 3cnfB | 0.10 | 0.09 | 3.29 | 0.39 | FFAS-3D | | DDQIDIFRWSRYFLDELQLRRLGLRLITNPRIAGVRIMYLTDDDPDPDFVPDVPEGYVAV--------QYAHRLFSSSLANKRNRVTYTHPPTGMAYPSPTGRPHVHMTINERAGMSKLVADNIIASVIKSNWVVDILDIEYEGYTQHVDAESIMTAPKGKLFHLQFMDGLLRPEASGYPLQPISVARSMRAIVNHNE----------VDRPREMDTGTLSRNGDLLYSPVANG------------ |
6 | 6ybt2 | 0.09 | 0.09 | 3.22 | 1.01 | SPARKS-K | | LLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGADADWDTKHVLNSCRLWDCETGKQLALLKTNSAGNIIMFSTFVSFFDLRDNNEPYMKIPCNDSKIT----SAVWGPLGECIIAGHESGELNQYSAKSGEVLVNVKEHSRQINDIQLSRDMTMF------VTASKDNTAKLFDSTTLEHQKTFRTERPVNS--------AALSPNYDHVVLGGGQE--AMDVTTTSTR |
7 | 3kkzA | 0.08 | 0.02 | 0.65 | 0.19 | CNFpred | | ----------GYLAVSECSWFTDERPAEINDFWMD----AYPEIDTIPNQVAKIHK-AGYLPVATFI----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
8 | 4w8yA | 0.07 | 0.05 | 2.18 | 0.67 | DEthreader | | NAITHLTALEHVIYPSLRDQPVANLP-NKAIYFTVS--------TENAGL--SD-E-DVKKWLKFA-----EKKENSRVLERIAIYLVKILD------------SLGERKV---------RFESVVDVRMLSDLYYTWSGL------PKYYAI--L-V-MDGDMGVISGEVLRYYSVIALFSREVRVVKDEGL-ILPVDKALEVKIREFLLPGWKLSAGKDTLAVGWE----LIRVFY-V------ |
9 | 3degC | 0.07 | 0.07 | 2.70 | 0.79 | MapAlign | | -IIAHIDHGKSTLSDRIIERERGITIKADGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAAAEEIEDIVGIDATDAV------------RCSAKTGVGVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVMSTGQTYNAELKCGEVGWLVCAIIPRQQFDIAIQAAIGTHIIARSTVKQL-- |
10 | 6fmlG | 0.12 | 0.12 | 4.17 | 0.85 | MUSTER | | YSTRSLVEYRLPRLIWCDGGRLDKPGPGNVAGFRSKYLNHMMNIWTPENIRSSLEGIENFTWLRFVDTSLQEAYRASHTDVFSKQNRLGHMQIVYDEPEDKKWTPVHALFQICERENPKAVAEITTEGVLRDLMNIARVKYRELGLCRLEKAARPRASAPPIEVVCDSRSAVIERENIMFHPAMRKALFGPTPSEIKEASFGPRPVTL----YPPRALLPAPDHDKQRFTNITVPSMARFVTDSGK |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
|