Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| SS Seq | CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHSSSCCSSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCSSSSSHHHHHHHHHHHHHHHCCCCCCCCCCCCSCCCCCCCCCCCCCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC MGGDLVLGLGALRRRKRLLEQEKSLAGWALVLAGTGIGLMVLHAEMLWFGGCSWALYLFLVKCTISISTFLLLCLIVAFHAKEVQLFMTDNGLRDWRVALTGRQAAQIVLELVVCGLHPAPVRGPPCVQDLGAPLTSPQPWPGFLGQGEALLSLAMLLRLYLVPRAVLLRSGVLLNASYRSIGALNQV |
1 | 6cnmA | 0.93 | 0.76 | 21.35 | 1.17 | DEthreader | | -------G--ALRRRKRLLEQEKSLAGWALVLAGTGIGLMVLHAEMLWFGGCSWALYLFLVKCTISISTFLLLCLIVAFHAKEVQLFMTDNGLRDWRVALTGRQAAQIVLELVVCGLHPAPVR-------------------PGFLGQEALLSLAMLLRLYLVPRAVLLRSGVLLNA-RS--AL---- |
2 | 6cnmA | 0.98 | 0.84 | 23.55 | 1.38 | SPARKS-K | | ---------GALRRRKRLLEQEKSLAGWALVLAGTGIGLMVLHAEMLWFGGCSWALYLFLVKCTISISTFLLLCLIVAFHAKEVQLFMTDNGLRDWRVALTGRQAAQIVLELVVCGLHPAPVRPGF------------------LGQGEALLSLAMLLRLYLVPRAVLLRSGVLLNASYRSIGALNQV |
3 | 6cnmA | 0.98 | 0.84 | 23.40 | 6.15 | HHsearch | | ---------GALRRRKRLLEQEKSLAGWALVLAGTGIGLMVLHAEMLWFGGCSWALYLFLVKCTISISTFLLLCLIVAFHAKEVQLFMTDNGLRDWRVALTGRQAAQIVLELVVCGLHPAPVRPGFL------------------GQGEALLSLAMLLRLYLVPRAVLLRSGVLLNASYRSIGALNQV |
4 | 6cnmA | 0.96 | 0.82 | 23.12 | 1.38 | FFAS-3D | | --G-------ALRRRKRLLEQEKSLAGWALVLAGTGIGLMVLHAEMLWFGGCSWALYLFLVKCTISISTFLLLCLIVAFHAKEVQLFMTDNGLRDWRVALTGRQAAQIVLELVVCGLHPAPVRPGFLGQG------------------EALLSLAMLLRLYLVPRAVLLRSGVLLNASYRSIGALNQV |
5 | 6cnmA | 1.00 | 0.86 | 23.98 | 1.35 | CNFpred | | ---------GALRRRKRLLEQEKSLAGWALVLAGTGIGLMVLHAEMLWFGGCSWALYLFLVKCTISISTFLLLCLIVAFHAKEVQLFMTDNGLRDWRVALTGRQAAQIVLELVVCGLHPAPVR------------------PGFLGQGEALLSLAMLLRLYLVPRAVLLRSGVLLNASYRSIGALNQV |
6 | 6bfiA | 0.08 | 0.07 | 2.70 | 1.00 | DEthreader | | RRAAHAAAVKLQELEQEIRKALAERVATDFV--NV-GGPIKALEDAALASPSDRQANFAQKAKEFEAHTARLADTAELVASSGG--C-----------S-D-AVAAELRKEAAKLRDSAVVARVVLE--N-----------PGNAKDYLRTVKEKWLEAESMGRSVDGIDSLEN-WVPPRRASEAWRK |
7 | 2izpA | 0.08 | 0.07 | 2.74 | 1.00 | DEthreader | | ----------AG-ARADDLRAAGVDRRVPEQKLGAAIDEFASL--RL-PDRFVDG-RRA-N-LTVFDDARVAVRGHARAQRNLLERLETELLGGQLVDVIG-QGKSDIDAYATIVEGLYSVAVIIMRDSLP-PDGTVWDTYQWNFSGQKDNIQNDVQTVEKYSHQNSNF--DNLVKVLSGAISTLT-- |
8 | 6w2wA | 0.11 | 0.10 | 3.66 | 0.78 | SPARKS-K | | SEEVNERVKQLAEKAKEAKEEVIEIVKELAELAKQVVAEIVYQLAEVAEHSTDPELIKEILQEALRLAEEQAARLALKAARLLEEARQLLSKDPENEAAKECLKAVRAALEAALLALLLLAKH-------------PGSQAAQDAVQLATAALRAVEAACQLAKQCIKAASEAAEEASKAAEEAQRHP |
9 | 6cnmA | 0.99 | 0.84 | 23.54 | 0.92 | MapAlign | | ----------ALRRRKRLLEQEKSLAGWALVLAGTGIGLMVLHAEMLWFGGCSWALYLFLVKCTISISTFLLLCLIVAFHAKEVQLFMTDNGLRDWRVALTGRQAAQIVLELVVCGLHPAP------------------VRPGFLGQGEALLSLAMLLRLYLVPRAVLLRSGVLLNASYRSIGALNQV |
10 | 6cnmA | 0.98 | 0.84 | 23.55 | 0.95 | CEthreader | | ---------GALRRRKRLLEQEKSLAGWALVLAGTGIGLMVLHAEMLWFGGCSWALYLFLVKCTISISTFLLLCLIVAFHAKEVQLFMTDNGLRDWRVALTGRQAAQIVLELVVCGLHPAPVRPGF------------------LGQGEALLSLAMLLRLYLVPRAVLLRSGVLLNASYRSIGALNQV |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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