Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Download alignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300
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| SS Seq | CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC MVQQRGARAKRDGGPPPPGPGPAEEGAREPGWCKTPSGHIKRPMNAFMVWSQHERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIPFVREAERLRLKHMADYPDYKYRPRKKSKGAPAKARPRPPGGSGGGSRLKPGPQLPGRGGRRAAGGPLGGGAAAPEDDDEDDDEELLEVRLVETPGRELWRMVPAGRAARGQAERAQGPSGEGAAAAAAASPTPSEDEEPEEEEEEAAAAEEGEEETVASGEESLGFLSRLPPGPAGLDCSALDRDPDLQPPSGTSHFEFPDYCTPEVTEMIAGDWRPSSIADLVFTY |
1 | 4btgA3 | 0.12 | 0.10 | 3.72 | 1.45 | SPARKS-K | | LTQAFAIGELKNQLSVGA---LQLPLQFTRTFSASMTSEVGRTATLGRLWSPSTPKE-LDPSARLRNTNGIDQLRSNLALFISSTIIPFIEAMSEV-------SP-FKLRPTSAIDHMGQPSHVVVYEDWQFAKEITAFTPVKLANNSNQRFLDVEPGAPIGNTRGTVNSGFPSVVERDYALD----RDPMVAIAALRTGIVDESLEARAKRSMFNYYAAVMHYAVAHNPEVVVSEHQGVAAEQGSL---YLVWNVRTELRIPVGYNAI--------EGGS--------IRTPEPLEAIAYNKPIQPSEVLQAKV |
2 | 1j47A | 0.51 | 0.13 | 3.86 | 1.40 | CNFpred | | -------------------------------------DRVKRPINAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPRRKAKMLPK--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
3 | 6jyxA | 0.05 | 0.05 | 2.19 | 1.24 | MapAlign | | ----------GWQFVQENGRTYYKKGDLKETYWRVIDGKYYYFDSLSGE--------------MVVGWQYIPFPSKGSTIGPYPNGIRLEGFPKSEWYYFDKNGVLQEFVGWKTLEIKTKDSVGRKYGEKRKRYYTNYYFNQNHSLETGWLYDQSNWYYLAKTEINGENYLGGERRAGWINDDSTWYYLDPTTGIMQTGWQYLGNKWYYLRSSGYQEGTTWYYLDHPNGDMKTGWQNLGNKWYYLRSSGAMATGWYQDGSTWYYLNAGDMKTGWFQVNGNWYYAYSS---GALAVNTTVDGYSVNYNGEWV---- |
4 | 1gt0D | 0.62 | 0.16 | 4.45 | 2.32 | HHsearch | | -------------------------------------DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
5 | 1vt4I3 | 0.12 | 0.12 | 4.17 | 0.85 | CEthreader | | GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG |
6 | 7blpA | 0.08 | 0.08 | 3.14 | 0.55 | EigenThreader | | LVGSNIVRLSQLVDLPTYRDSILGPLLEQIVQCRDIRLNPHVNVKAIVIGMMNRLSDYAEREVPIALCCSLANLSLNIYPERLDYVDGILAYALAKVKEHANSADLHSQEGETDETMEAEGNERRFKAREHYDDNWSSQSSSLFKFLHSAISTLYTRVNGPGVADLCLRLFCSCGQVADMTEFEEVAYEFFAQAFTVYEESFQAVCVIASALHRTRNFGRENYDTLITKCAQHASKLLRKPDQCRAVYLASHLWWATPIAARGETEDTELYRDGKRVLECLQRALRVADSCMERYVYYFDQRNESVTTKYLNGLI |
7 | 2lefA | 0.31 | 0.08 | 2.50 | 0.84 | FFAS-3D | | --------------------------------------HIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
8 | 7abiA | 0.09 | 0.09 | 3.36 | 1.41 | SPARKS-K | | PLDYADNILDVEPLEAIQLELDPEEDAPVLDWFYDHQPLRDSR-------KYVNGSTYQRWQFTLPMMSTLYRLAN--QLLTDVDDL-FDLKFFTSKALNMAIGP--KFEPLVRDINLQIIRQPIRPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPISHRHSVKSQEPLPDDDEEFELPEFVEPFLKDTPLYTDNTANIALLWAPRPFNLRSGRTRRALDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATKFFQSTKLDWVEVGLQVCRQGYNMLNL |
9 | 1j46A | 0.52 | 0.14 | 3.95 | 1.38 | CNFpred | | -------------------------------------DRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPRRKAKMLPK--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
10 | 6h02A | 0.05 | 0.03 | 1.63 | 0.67 | DEthreader | | ------------------------LDPATLRFPLK-GLLPYDKDLFEPQTALVDQLVDLVVYAM-QLWQHLSSQLFF-------------------LIKGRDHLLYHAAMCLCNMLVETIYGRIPLPGTN-----Q--L-SEELNRAIIL-TIMSFTPH-NWANVPQESRNLKNVEEYKKSMSNEIIHFSPPL--------------------VAHVRTFIYFLAIQSPYLPIYFG----DRFNEFNPAALT-LLVVLKSRYTALAHAVW-HHS--------S-------I-GQLSLIPKFLVLYVHLVGPFLFH |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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