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Template proteins with similar binding site:
Click to view | Rank | CscoreLB | PDB Hit | TM-score | RMSDa | IDENa | Cov. | BS-score | Lig. Name | Download Complex | Predicted binding site residues |
| 1 | 0.07 | 3fp4A | 0.464 | 4.58 | 0.134 | 0.582 | 0.60 | III | complex1.pdb.gz | 101,144,174 |
| 2 | 0.06 | 3hymL | 0.448 | 3.48 | 0.140 | 0.516 | 0.49 | III | complex2.pdb.gz | 59,74,140,141,144,147,171,174,175,178,181,182,189,206,208,209,211,215,218,219,242,245,246 |
| 3 | 0.01 | 1o6oA | 0.375 | 6.34 | 0.060 | 0.555 | 0.52 | III | complex3.pdb.gz | 99,422,423,427,455,456 |
| 4 | 0.01 | 2xpiD | 0.433 | 5.45 | 0.089 | 0.580 | 0.41 | III | complex4.pdb.gz | 101,139,141,144,145,208,212,215,218,219,242,246,249,252,253,276,283 |
| 5 | 0.01 | 1f59B | 0.310 | 5.86 | 0.067 | 0.433 | 0.42 | III | complex5.pdb.gz | 102,105,106,458 |
| Click on the radio buttons to visualize predicted binding site and residues. |
(a) | CscoreLB is the confidence score of predicted binding site. CscoreLB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction. |
(b) | BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
| (c) | TM-score is a measure of global structural similarity between query and template protein. |
(d) | RMSDa the RMSD between residues that are structurally aligned by TM-align. |
(e) | IDENa is the percentage sequence identity in the structurally aligned region. |
(f) | Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein. |
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