Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| SS Seq | CCCCCCCCCCCCCCSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCSSSSCCCSSSSSSSCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC MIPPADSLLKYDTPVLVSRNTEKRSPKARLLKVSPQQPGPSGSAPQPPKTKLPSTPCVPDPTKQAEEILNAILPPREWVEDTQLWIQQVSSTPSTRMDVVHLQEQLDLKLQQRQARETGICPVRRELYSQCFDELIREVTINCAERGLLLLRVRDEIRMTIAAYQTLYESSVAFGMRKALQAEQGKSDMERKIAELETEKRDLERQVNEQKAKCEATEKRESERRQVEEKKHNEEIQFLKRTNQQLKAQLEGIIAPKK |
1 | 2tmaA | 0.06 | 0.06 | 2.55 | 0.44 | CEthreader | | QAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVE--EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEK--MEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNN-LKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDH |
2 | 3jbrF | 0.05 | 0.05 | 2.16 | 0.83 | EigenThreader | | GQFENKVDVSLEDIKRLTPRFTLCPN--GYYFAIDPNGYVLLHPNLQPKPPKSQEPVTLDENDIKVEIRNKMIRTYTWTPVYSSLALVLYYIKAKIQARYSETLKGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-----------------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-------GEQTQYFFDNDDCG |
3 | 2tmaA1 | 0.17 | 0.10 | 3.17 | 0.99 | FFAS-3D | | --------------------------------------------------------------------------------------------QMLKLDKENALDRAEQAEADKKAAED-----RSKQLEDELVSLQKK-----------LKGTEDELDKYSEALKDA-QEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA-DESERGMKVIESRAQKDEEKMEIQEIQLKEA----- |
4 | 6w2wA | 0.09 | 0.07 | 2.81 | 0.82 | SPARKS-K | | ---------------------SEEVNERVKQLAEKAKEATDKEEVIEIVKELAELAKQSTDPNVVAEIVYQLAEAEH------------STDP---ELIKEILQEALRLAEEQGDE-----ELAEAARLALKAARLLEEARQLLSKNEAAKECLKAVRAALEAALLALLLLAKQAAQDAVQLATAALRAVEAACQLAKQYDIAKKCIKAASEAAEEASKAAEEAQRHPSQKARDEIKEASQKAEEVKERCERA----- |
5 | 4tqlA | 0.09 | 0.06 | 2.20 | 0.65 | CNFpred | | -----------------------------------------------------------------------------------------------RKIFQEVKQEVEKAIEEMKKLYDEAKKKIEQMIQQIMEELLKRAKEEMKKVKDKMEKLLEKLKQIMQEAKQKMEKLLKQLKEEMKKMKEKMEKLLKEMKQRMEELEKIKKNIDDLKKIAEDLIKKAEENIKEAKKIAEQLVKRAKQLIEKAKQVAEELIKKIL |
6 | 6rlbA | 0.05 | 0.03 | 1.63 | 0.83 | DEthreader | | ------------------------SEVVNSIVWVRLDQLKLYEQQFWS--I----------GL--CI-EASSLKVHY--------------------------------------QRPMML--QSALAFEQIIKNSKGSKSQIPKELEGYIQKLQNAAERLATENRKLRKWHTTFCEKVVVLMNIDLLRQGALENLPEINKVCLNINC-NPVKTVIDDLIQKLFDLLVLSLKKSIQAHLHEIDTFVTEAMEVLTIMQI |
7 | 6o7ua | 0.09 | 0.07 | 2.83 | 1.00 | MapAlign | | LGKMSVFMVMYMITGSIRR----------------------------------------TKVDILNRILWRLLIFQNFPIVEKDCFIIFTEGWVPSTELIHLQDSLKDFQSIVDATYKEINAGGDMGHGFILFLMALFLVLMAFTGRYVLLLMGAFSVYTGLLFSNSYKMKLSILMGYAHMTYSFNFGDVMIHQVIHTIEFCLNCRLWALSLAHAQLSSVLWDMTNSGPLAVMKVVFLFAMWFVLTVCLVFMEGTSAM |
8 | 5cwmA | 0.12 | 0.10 | 3.59 | 0.76 | MUSTER | | -------------------DPEDELKRVEKLVKEAEELLRQAKEKGSEEDLEKALRTAEEAAREAKKVLEQA------EKEGDPEVALRA-----VELVVRVAELLLRIAKESGSEEA--LERALRVAEEAARLAKRVLELAEKQPEVALRAVELVVRVAELLLRIAKESGSEEALERALRVAEEAARLAKRVLELAEKQGDPEVARRAVELVKRVAELLERIARESGSEEAKERAERVREEARELQERVKELRER-- |
9 | 6f1tX2 | 0.14 | 0.05 | 1.71 | 0.92 | HHsearch | | -----------------------------------------------------------------------------------------------------------------------------------------------------------QHIIRLESLQAEIK---------M--LSDRKRELEHRLSATLEENDLLQGTVEELQDRVLILERQGHDKD-LQLHQSQLELQEVRLSYRQLQGGGGGGGGGGG |
10 | 5c21A | 0.09 | 0.08 | 3.11 | 0.43 | CEthreader | | -------------------MASKEIKPIENSIVKEIIVKEVLLKLTALGAEADTLKTQSSLLQTRLEQTRYQILSRSIELNKLPELKLPYFQNVSEEEVLRLTSLIKEQFSTWQNQKY---QKELNLDKKRAERLTILARINRYENLSRVEKSRLDDFRSLLHKQAIAKHAVLEQENKYVEAANELRVYKSQLEQIESEILSAKEEYQLVTQLFKNEILDKLRQTTDNIELLTLELEKNEERQQASVIRAPVSGKVQQ |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
|