Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| SS Seq | CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PDLFWSPLEATVSAPSPAPWEAFPVATSPDLPMMAMLRGPKEWMLPHPTPISTEANRVEAHGEATATAPPSPAAETKVYSLPLSLTPTGQGGEAMPTTPESPRADFRETGETSPAQVNKAEHSSSSPWPSVNRNVAVGFVPTETATEPTGLRGIPGSESGVFDTAESPTSGLQATVDEVQDPWPSVYS |
1 | 1oh2Q | 0.06 | 0.06 | 2.51 | 0.64 | CEthreader | | WNDGLRSNFSLYGRNFGDIDDSSNSVQNYILTMNHFAGPLQMMVSGLRAKDNDERKDSNGNLAKGDAANTGVHALLGLHNDS-------------FYGLRDGSSKTALLYGHGLGAEVKGIGSDGALRPGADTWRIASYGTTPLSENWSVAPAMLAQRSKDRYADGDSYQWATFNLRLIQAINQNFAL |
2 | 4yibA | 0.06 | 0.06 | 2.72 | 0.52 | EigenThreader | | GLSLEQRSFAWGVLGHYQSQNLNVPAALDYYGKVADRRQLTDDQIEWYARAALRARRWDELASVISHPSPTWLYWLARSRAATGNTQEAEKLYKQAAATGRNFYAVLAGEELGRKIDTRNNVPDAGRTDRKLNHAQNVNVDFVIGAQSRVGAQGLQVPATAREIAGKIGDAAQLYTADGNIRGTWYAD |
3 | 2xd8A3 | 0.11 | 0.10 | 3.66 | 0.44 | FFAS-3D | | -----KGFQHETIARDLVTKRTLKNGKSLQFIYTGRMTSSF---HTPGTPILGNADKAPPVAEKTIVMDDLLISSASATNFVEPGGTQIRVGSGTNESDAFTASALVNGGTTGETSPGNLGSHIGPTPENANATGGVNNDYGTNAELGAKSCGLIFQKEAA-GVVEAIGPQVQVTNGDVSVIYQG--- |
4 | 4k0mC | 0.09 | 0.09 | 3.41 | 1.37 | SPARKS-K | | --KVYTIDEAARTAKFDETVEVHAKLGISDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA---- |
5 | 6eojA | 0.05 | 0.04 | 1.79 | 0.67 | DEthreader | | -DDVLDATVSHSLATH---------LLVVRNILS--------EFKFHILLLITLRLLFNIIAIDIQFLKAL---YVILTLNI-PAATKI-ESTTIAFVDTGVLQSTKIINN-IMFREKNTLKSNPGSG-NALSSLRHDNERKLQRSRF--PSVLIKYPLKQITLQKSQVDGSV-----------LG-- |
6 | 4k3bA | 0.09 | 0.09 | 3.44 | 0.95 | MapAlign | | -YDRVNFGLAAEHLTGKTDGADGSFKGLLYKGTVGWGRNKLTGVNAEIALPGSKLQYYSATHNQTWFFPLSKTFTLMLGGEVGIAGGYGPFFENFYGGGLGSVRGYESGTLGPKVYDEYGEKISYGGNKKANVSAELLFPMPGAKDARTVRLSLFADAGSVWNAHKSFTNELRYSAGGAVTWLSPLGP |
7 | 2nbiA | 0.14 | 0.14 | 4.73 | 0.86 | MUSTER | | LNPSSQPSECADVLEECPIDECFLPYSDASRPPSCLFGRPDCDVLPTPQNINCPRCCATECRPDNPMFTPSPDGSPPICSPTMLPTNQPTPPEPSSAPSDCGEVIEECPLDTCFLPTSDPARPPDDVLPFPNNLGCPACCPFECSPDNPMFTPSPDGSPPNCSPTMLPTPQPSTPTVITSPAPSSQPS |
8 | 2pffB | 0.18 | 0.17 | 5.53 | 0.70 | HHsearch | | TTLDAEKVFTQGLNPSNTPDKDYLLSIPISCPLIHYVVTAKLLGFTPGE-LRSYLKGATGHSQGLVTA--VAIAETPNTSLPPSILELSISNLTQPISLVNGAKNLSRIPFSRKLKFSNRFLPVASPFHLVKNNVSFNAKDIQIPVYDTF----DGSDLRVLSG-----SISERIVDCILDFGPGGAS |
9 | 2ymuA2 | 0.09 | 0.09 | 3.41 | 0.62 | CEthreader | | LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGSASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIAS--ASSDKTVKLWN---- |
10 | 6vp9B1 | 0.06 | 0.06 | 2.55 | 0.50 | EigenThreader | | LKKHCAKVLKAIGLQRTG---KQEEAFTLAQEVAALEPTDDNSLQALTILYREMHRPELVTKLYEAAVKKVPNSEEYHSHLFMAYARVGEYKKMQQAGMALYKIVWSVMSLIMQSISAQDENLSKTMFLPLAERMVEKMVKE---DKIEAEAEVELYYMILERLGKYQEALDVIRGKLGEKLTSEIQS |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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