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Template proteins with similar binding site:
Click to view | Rank | CscoreLB | PDB Hit | TM-score | RMSDa | IDENa | Cov. | BS-score | Lig. Name | Download Complex | Predicted binding site residues |
| 1 | 0.01 | 2vdcA | 0.387 | 6.80 | 0.063 | 0.670 | 0.49 | F3S | complex1.pdb.gz | 278,279,289,290 |
| 2 | 0.01 | 2h640 | 0.160 | 4.88 | 0.057 | 0.221 | 0.43 | III | complex2.pdb.gz | 189,192,193,219,221,224,225,228,231,232,233,234 |
| 3 | 0.01 | 1ea0A | 0.383 | 6.73 | 0.053 | 0.648 | 0.46 | F3S | complex3.pdb.gz | 205,206,207,208,212 |
| 4 | 0.01 | 1ofdB | 0.394 | 6.81 | 0.076 | 0.679 | 0.41 | F3S | complex4.pdb.gz | 190,191,192,227,228,267,268 |
| Click on the radio buttons to visualize predicted binding site and residues. |
(a) | CscoreLB is the confidence score of predicted binding site. CscoreLB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction. |
(b) | BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
| (c) | TM-score is a measure of global structural similarity between query and template protein. |
(d) | RMSDa the RMSD between residues that are structurally aligned by TM-align. |
(e) | IDENa is the percentage sequence identity in the structurally aligned region. |
(f) | Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein. |
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