>O00178 (235 residues) VGDNDFLEVRVAVVGNVDAGKSTLLGVLTHGELDNGRGFARQKLFRHKHEIESGRTSSVG NDILGFDSEGNVVNKPDSHGGSLEWTKICEKSTKVITFIDLAGHEKYLKTTVFGMTGHLP DFCMLMVGSNAGIVGMTKEHLGLALALNVPVFVVVTKIDMCPANILQETLKLLQRLLKSP GCRKIPVLVQSKDDVIVTASNFSSERMCPIFQISNVTGENLDLLKMFLNLLSPRT |
Sequence |
20 40 60 80 100 120 140 160 180 200 220 | | | | | | | | | | | VGDNDFLEVRVAVVGNVDAGKSTLLGVLTHGELDNGRGFARQKLFRHKHEIESGRTSSVGNDILGFDSEGNVVNKPDSHGGSLEWTKICEKSTKVITFIDLAGHEKYLKTTVFGMTGHLPDFCMLMVGSNAGIVGMTKEHLGLALALNVPVFVVVTKIDMCPANILQETLKLLQRLLKSPGCRKIPVLVQSKDDVIVTASNFSSERMCPIFQISNVTGENLDLLKMFLNLLSPRT |
Prediction | CCCCCCCSSSSSSSSCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHCHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCSSSSSSCCCCSSSSSSCCCHHHHHHHHHHHHHCCCCCSSSSSSSCCCCCCHHHHHHHHHHHHHCCCSSSSSSCCCCCCHHHHHHHHHHHHHHHHHCCCCCCSSSSSCCCHHHHHHHCCCCCCCCCSSSSSCCCCCCHHHHHHHHHHCCCCC |
Confidence | 9988897479999818899867899999555555687402234455178998396430114442011235533211146764212466505996899983898189999999997537998899999689998678999999999919999999977647997999999999999998609875305630552244344306766888389974477879999999999579999 |
H:Helix; S:Strand; C:Coil | |
Sequence |
20 40 60 80 100 120 140 160 180 200 220 | | | | | | | | | | | VGDNDFLEVRVAVVGNVDAGKSTLLGVLTHGELDNGRGFARQKLFRHKHEIESGRTSSVGNDILGFDSEGNVVNKPDSHGGSLEWTKICEKSTKVITFIDLAGHEKYLKTTVFGMTGHLPDFCMLMVGSNAGIVGMTKEHLGLALALNVPVFVVVTKIDMCPANILQETLKLLQRLLKSPGCRKIPVLVQSKDDVIVTASNFSSERMCPIFQISNVTGENLDLLKMFLNLLSPRT |
Prediction | 8657632100000010131410100010243325444234433243352345443134103320211323641644444434242342245752200000003144023100211243311000000005522351033003004317030000001013146631540153035105636144020213455412431551655420100101034362152035006503668 |
Values range from 0 (buried residue) to 8 (highly exposed residue) | |
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | 20 40 60 80 100 120 140 160 180 200 220 | | | | | | | | | | | | |||||||||||||
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SS Seq | CCCCCCCSSSSSSSSCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHCHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCSSSSSSCCCCSSSSSSCCCHHHHHHHHHHHHHCCCCCSSSSSSSCCCCCCHHHHHHHHHHHHHCCCSSSSSSCCCCCCHHHHHHHHHHHHHHHHHCCCCCCSSSSSCCCHHHHHHHCCCCCCCCCSSSSSCCCCCCHHHHHHHHHHCCCCC VGDNDFLEVRVAVVGNVDAGKSTLLGVLTHGELDNGRGFARQKLFRHKHEIESGRTSSVGNDILGFDSEGNVVNKPDSHGGSLEWTKICEKSTKVITFIDLAGHEKYLKTTVFGMTGHLPDFCMLMVGSNAGIVGMTKEHLGLALALNVPVFVVVTKIDMCPANILQETLKLLQRLLKSPGCRKIPVLVQSKDDVIVTASNFSSERMCPIFQISNVTGENLDLLKMFLNLLSPRT | |||||||||||||||||||
1 | 2dy1A | 0.21 | 0.17 | 5.54 | 1.17 | DEthreader | ---G-AMIRTVALVGHAGSGKTTLTEALLYKT---ERRGRVTTTTDYTPEAKLHTTVRTGVAPLLFR-------------------------GHRVFLLDAPGYGDFVGEIRGALE--AADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKGG--DYYALLEDLRSTLG----PILPIDLIDVFHGRVLIVETARGLLYPVALASGEREIGVLPLLELILELPSPT | |||||||||||||
2 | 2dcuA1 | 0.24 | 0.20 | 6.09 | 1.40 | SPARKS-K | --KTRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEEL-----------RRGITIKIGFADAEIRRCSNCGR--------YSTSPICPYCGRRVSFIDSPGHEALMTTMLAGASL--MDGAILVIAANEPPRPQTREHLMALQIIGQNIIIAQNKIELVDKEKALENYRQIKEFIKGTVAEN-----------------------APIIPISALHGANIDVLVKAIEEIPTPK | |||||||||||||
3 | 2dy1A | 0.20 | 0.17 | 5.31 | 0.61 | MapAlign | -----AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVTTTTDTPEAKLHRTTVRTGVAPLLF-------------------------RGHRVFLLDAPGYGDFVGEIRGALE--AADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG---GYYALLEDLRSTL----GPILPIDLPLYGLIDVFHEAVRRGLLYPVALASGEREIGVLPLLELILALPSP- | |||||||||||||
4 | 5j8bz | 0.20 | 0.16 | 5.16 | 0.39 | CEthreader | ILENLSRIRNFSIIAHVDHGKSTLADRILETHAVSDREMREQFLDSLELERERGITIKASAVRVTYRAKDG--------------------EEYVFHLIDTPGHVDFTYEVSRAL--AAVEGVLLVVDASQGVEAETLAKFYMALEHGHVIIPVINKIDLPNA-RPLEVALEVEEVLGL--------------------------PADEAIFASGKTGEGVEEILEAIVQRIPPP | |||||||||||||
5 | 2dcuA1 | 0.24 | 0.20 | 6.23 | 1.28 | MUSTER | --KTRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSE-----------ELRRGITIKIGFADAEIRRCSNCGRYSTSPICPYCGHETEFI--RRVSFIDSPGHEALMTTMLAGA--SLMDGAILVIAANEPPRPQTREHLMALQIIGQNIIIAQNKIELVDKEKALENYRQIKEFIKGTVAENAP-----------------------IIPISALHGANIDVLVKAIEEIPTPK | |||||||||||||
6 | 2dy1A | 0.21 | 0.18 | 5.69 | 1.07 | HHsearch | ----GAMIRTVALVGHAGSGKTTLTEALLYGAKERGREEGTTTTDYTPEAKLHRTTVRTGV-------------------APLLFR------GHRVFLLDAPGYGDFVGEIRGALE--AADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDK-GGD-YYALLEDLRSTLGPILPIDLPLYEGGKDEGLLEHEAVRRGLLYPVALASGEREIGVLPLLELILALPSPT | |||||||||||||
7 | 1eftA1 | 0.22 | 0.19 | 5.91 | 1.98 | FFAS-3D | EFIRTKPHVNVGTIGHVDHGKTTLTAALTFAENPNVEVKDYGDIDKAPEERARGITINTA-------------------------HVEYETAKRHYSHVDCPGHADYIKNMITGAAQ--MDGAILVVSAADGPMPQTREHILLARQVGVPIVVFMNKVDMVDPELLDLVEMEVRDLLNQYEFPGIRGSALLALEEMHKNPKTKRGEN-------EWVDKIWELLDAIDEYIPTPV | |||||||||||||
8 | 2dcuA1 | 0.25 | 0.20 | 6.21 | 0.62 | EigenThreader | --KTRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELR-------------RGKIGFADAEIRRNCGRYSTSPICPYC-----GHETEFIRRVSFIDSPGHEALMTTMLAGA--SLMDGAILVIAANEPCPRQTREHLMALQIIGQNIIIAQNKIELVDKEKALENYRQIKEFIK----GTVAE-------------------NAPIIPISALHGANIDVLVKAIEEFIPTP | |||||||||||||
9 | 4zu9A | 0.28 | 0.20 | 6.24 | 1.67 | CNFpred | -----MKYILFATAGHVDHGKTTLIKTLTGIDTD-----------RLPEEKKRGLSIDIGFAYIDFP-----------------------DINTRLEIIDVPGHERFIKNAIAGIC--SASGLILVVDPNEGIMPQTIEHLRVAKSFGIHGIAVLTKMDKVDEELAHIAEEELIAFLEKE------------------------EMNMEIVKVSAVTGQGIEDLKNSIKKLLESI | |||||||||||||
10 | 5kcs1w | 0.16 | 0.13 | 4.40 | 1.17 | DEthreader | -----MKIINIGVLAHVDAGKTTLTESLLYNG--ELGSVDGTTRTDNTLLERQRITIQTGITSFQWE-------------------------NTKVNIIDTPGHMDFLAEVYRSLS-V-LDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGI-DLSTVYQDIKEKLS---AEIVIKQKCVTNFTEWDVIEGNNCSLFPLYHGSAKSNIGIDNLIEVITNKYSST | |||||||||||||
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Top 10 structural analogs in PDB (as identified by
TM-align)
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Top 5 enzyme homologs in PDB
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Template proteins with similar binding site:
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References: | |
1. | Wei Zheng, Chengxin Zhang, Yang Li, Robin Pearce, Eric W. Bell, Yang Zhang. Folding non-homology proteins by coupling deep-learning contact maps with I-TASSER assembly simulations. In preparation, 2020. |