Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480
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| SS Seq | CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCSCCCCCCCCCCCCCCCCHHHHHCHHHHHSSCCCCCCCCCCSSSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC MAAKLRAHQVDVDPDFAPQSRPRSCTWPLPQPDLAGDEDGALGAGVAEGAEDCGPERRATAPAMAPAPPLGAEVGPLRKAKSSRRNAWGNLSYADLITKAIESAPDKRLTLSQIYDWMVRYVPYFKDKGDSNSSAGWKNSIRHNLSLHTRFIRVQNEGTGKSSWWMLNPEGGKTGKTPRRRAVSMDNGAKFLRIKGKASKKKQLQAPERSPDDSSPSAPAPGPVPAAAKWAASPASHASDDYEAWADFRGGGRPLLGEAAELEDDEALEALAPSSPLMYPSPASALSPALGSRCPGELPRLAELGGPLGLHGGGGAGLPEGLLDGAQDAYGPRPAPRPGPVLGAPGELALAGAAAAYPGKGAAPYAPPAPSRSALAHPISLMTLPGEAGAAGLAPPGHAAAFGGPPGGLLLDALPGPYAAAAAGPLGAAPDRFPADLDLDMFSGSLECDVESIILNDFMDSDEMDFNFDSALPPPPPGLAGAPPPNQSWVPG |
1 | 5jcss | 0.11 | 0.10 | 3.47 | 1.29 | SPARKS-K | | AYIPELDISFSCHPNFNPQYQPKSFIDMLTSDDLLLIAKHLYPSIEPDIIASTLEDQVCKRKLWGNSGSPWEFNLLLNQYSICEDVDVFDFVDIIVKQRF--RTISDKNKAQLLIE------DIFPLECNVAVYESVLKAINNNWPL----VLVGPSNSGKT--ETIRFLASILGPRVDVFSMNIDSMDGYEQVDLTRQISYITEELTNINMKLSPNATALNLLKYLLNNIVTPEKFQDFRNRFNRFFSHLEGHPLLKTMSMNIEKMTEIITKEASVKFEWFDGMLVKAVEKGHPSVLDRLNSLDGSLLINECSQEDGQPRVLHSRSTAFDRLTLGFELGENIDFVSIDDGIKKIKLNEPDMSIPLKHYVPSYLSRPCIFAQVHDILLLSDEEPIEESLAAVIPISHLGEVGKWANNVLNCTEYSEKKIAER------LYVFITFLT---------------------DMGVLEKINNLYK----------- |
2 | 2k86A | 0.87 | 0.18 | 5.15 | 1.87 | CNFpred | | -------------------------------------------------------------------------------GSSSRRNAWGNLSYADLITRAIESSPDKRLTLSQIYEWMVRCVPYFKDKGDSNSSAGWKNSIRHNLSLHSRFMRVQNEGTGKSSWWIINPDGGKSGKAPRRRA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
3 | 2uvcG | 0.05 | 0.05 | 2.32 | 1.11 | MapAlign | | QAKQAIVTYKRPTGGVITVLSEMGEPIHKLATRGVLFWKELDDKIFSLDRSKRVAELKKRRDYIIKKLNDDFQKVWFGRNSAGEPVDLEDMTYAEVVHRMYVKHEKRWIDKKLTGDFIRRVSLLQNYSDLDEPYPAVDRILAAQSAKLVKTVEIKLVGDNEIALTLFEGRTAEGGVVPLTFRFTYHPMDFAIVVGWKAITKPIVLDTTAQINAVINQDSGKMVEVCGTLKRRLQSLVRFKNKNVYSSVQTIGQVLLELPTKEIIQVASVDYEAGESHGNHVSRVFSSYANLPGTITHGMYTSAALVETWAAENNIGRVRSYHVNMVGMVLPNDAITVKLEHVGMIAGRKIIRADKHFRENYGFSIIDIVKNNPKELTVHFGGPRGKIIRQNYMSMTFETVNADGSIKTEKIFKEVDENSTSYTYRSPSGLLSATQFTQPALTLMEKASFEALVALADVMPIESLEVTGWLLEIVNYNVANMQYVAAGDLRAL |
4 | 2k86A | 0.87 | 0.18 | 5.15 | 4.21 | HHsearch | | -------------------------------------------------------------------------------GSSSRRNAWGNLSYADLITRAIESSPDKRLTLSQIYEWMVRCVPYFKDKGDSNSSAGWKNSIRHNLSLHSRFMRVQNEGTGKSSWWIINPDGGKSGKAPRRRA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
5 | 1vt4I3 | 0.12 | 0.10 | 3.67 | 0.79 | CEthreader | | DNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQRGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG-------------------------------------------------------------- |
6 | 1slyA | 0.07 | 0.07 | 2.74 | 0.77 | EigenThreader | | LYPYLEYRQITDD--------LMNQPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQRIRLAMKAGNTGLVTVLAGQMPADYQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAWNPKVKSPVGASGLMQIMPGTATHTVKMFSIPGYSSPGQLLDPETNINIGTSYLQYVYQQFGNNRIFSSAAYNAGLGNSAGRIDAVAFVESIPFSETRGYVKNVLAYDAYYRYFMGDKPTLMSATEW |
7 | 2k86A | 0.88 | 0.18 | 5.15 | 1.00 | FFAS-3D | | --------------------------------------------------------------------------------SSSRRNAWGNLSYADLITRAIESSPDKRLTLSQIYEWMVRCVPYFKDKGDSNSSAGWKNSIRHNLSLHSRFMRVQNEGTGKSSWWIINPDGGKSGKAPRRRA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
8 | 5yfpA | 0.08 | 0.08 | 3.10 | 1.24 | SPARKS-K | | GPNIRPYEDKVNDECHRIIPTLSLFLMEMSNFSNDIENVESQDNGLQVESANKKLLWNTLDELLKTVSLDEISLNQLLECPIREKNLPWMENQLNLLLKAFQAIGSDGNERLQFYEKVTKIFKKFSNIRGQDISHDQMIRILTTLLIFSPLILFCKE-------------------ISQKSYQAIVENTKKISQLQGIDTNDENELSLSQLLNEWDTFRKERKTNINPVFKNSFSLECLQTMRQEEVFFHISSKHNEYIKHFNDPDAPPILLDTVKVMQSDREAVIETQLVSRIFQPIVTLSSYFVELVKAEPTVAPALTFYLENEIKSLESSNHEFLTRMYTQIKQVWSDNVEEQVLHFERISNATTNGEILPGILDLPVGLKDLFQFAKRSMDIKDTDEGYESIELMNSSFRKLSIAATRSITDYMETNWLTEMLSMPKLTAFVY-GVSNIIENILLAYTSHEILVKRLHTHMVNDFGYHQENAINNVLC |
9 | 2mbfA | 0.52 | 0.11 | 3.11 | 1.51 | CNFpred | | -------------------------------------------------------------------------------------NPWGAESYSDLIAKALKSTFDGRMRLNEIYNWFASNVPYFGNRTSQEQSAGWKNSIRHNLSLHSRFMRIQNEGAGKSSWWVINPDAKPGRNPRRQRSATLE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
10 | 7cpxA | 0.08 | 0.05 | 2.15 | 0.67 | DEthreader | | -----------------------------HLLLGKLSEWLNFVRDIGVMEAALIATHNLTADFKIDSCLSEGNLSLSA-KGQLA-L----------YHELGLMG-YNYSKDFRRLHNTLDFIP---L-----LDVAFQTVIGAYSSPGDRLRCLYVTHVYDKGDTDHAM----S-L-RRNNMNSSRRARLESAETWFV---QMETK-I-----FS-CPHALRVQFFYLVQGHVQEG-------ALAERNASIVSLTVAPLSADQ-AALFTDTVS--L---------------------FAADKTMVQHGAHIVLVLVTLLHLPPVG-GIA-F-GPL---V--LQDVMLMMEVLNPKVEGVRILHFVMFSSAVMGASAANCYLQA-------LAQQRVAS-------D----LFAVVAGARKFATVLDMADLEL--------------P-P--LDPALKDRITFF------------------------IPEY |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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