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Template proteins with similar binding site:
Click to view | Rank | CscoreLB | PDB Hit | TM-score | RMSDa | IDENa | Cov. | BS-score | Lig. Name | Download Complex | Predicted binding site residues |
| 1 | 0.01 | 1gzmA | 0.519 | 5.06 | 0.047 | 0.803 | 0.63 | ZN | complex1.pdb.gz | 71,73,74 |
| 2 | 0.01 | 1zvzA | 0.416 | 4.58 | 0.048 | 0.592 | 0.54 | III | complex2.pdb.gz | 35,38,39,42,46,47,78,111,118,122,129 |
| 3 | 0.01 | 1rke1 | 0.408 | 2.78 | 0.046 | 0.484 | 0.55 | III | complex3.pdb.gz | 26,27,33,66,69,72,73,76,77,79,83,112,113,116,119,120,123,127 |
| 4 | 0.01 | 2frvL | 0.543 | 4.63 | 0.048 | 0.785 | 0.55 | FCO | complex4.pdb.gz | 32,78,79,113,114,115,155,158 |
| 5 | 0.01 | 2ibfA | 0.422 | 4.95 | 0.042 | 0.632 | 0.55 | III | complex5.pdb.gz | 47,65,72,76 |
| 6 | 0.01 | 2gdcA | 0.419 | 4.75 | 0.064 | 0.610 | 0.60 | III | complex6.pdb.gz | 31,34,35,38,39,42,46,64,111,118,122,125,126,129 |
| Click on the radio buttons to visualize predicted binding site and residues. |
(a) | CscoreLB is the confidence score of predicted binding site. CscoreLB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction. |
(b) | BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
| (c) | TM-score is a measure of global structural similarity between query and template protein. |
(d) | RMSDa the RMSD between residues that are structurally aligned by TM-align. |
(e) | IDENa is the percentage sequence identity in the structurally aligned region. |
(f) | Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein. |
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