Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| SS Seq | CCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCSSSSCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC RHLPSVSSLPFHPQLHPQQMIISRHLPSVCGGRFHPERMIISRHLPSVSSLPFHPQLHPQQMIISRHLPSVCGGRFHPQQMIISRHLPSVSSLPFHPQLHPQQMIISRHLPSVCGGRFHPPPEPKRRRVGDVEPSRKPKRRRAADVEPSSPEPKRRRVGDVEPSRKPKRRRA |
1 | 4gt6A4 | 0.04 | 0.02 | 0.89 | 0.61 | CEthreader | | AGCISLKSIDIP-------------------EGITQILDDAFAGCEQLERIAIPS-------------------SVTKIPESAFSNCTALNNIEYSGRSQWNAISTDSGL-------------------------------------------------------------- |
2 | 3cb2A1 | 0.08 | 0.07 | 2.73 | 0.53 | EigenThreader | | AGNNWASGFSQGE----KIHEDIFDIIDREALEGFVLCHSIAGGTGSGLGSYLLERLNDRY-----------PKKLVQTYSVFPVVVQPYNSLLTLKRLTQNNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNND-----------LIGLIASLIPTPRLHFL |
3 | 3rj1C | 0.16 | 0.12 | 4.08 | 0.36 | FFAS-3D | | QALDAVRRL----------AQLTHSLRRI--------------RDESKAELPQWYTLQSQLNVTLSQLVSVTS--------TLQHFQETLDSTVVYPLPKFTTLLRKKNIPEVDEWKYVRETSGVTTALLKDEEIEKLLQQDARTTFRNEYGKHDPFNVDTFTGEK------ |
4 | 6y53o | 0.06 | 0.06 | 2.49 | 0.90 | SPARKS-K | | -----QDATVYVGGLDEKVS--EPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKYAFINF-ASFDASDAAIEAMNGQYLCNRPI-TVSYAFKKD---- |
5 | 2bkuB | 0.06 | 0.03 | 1.51 | 0.73 | CNFpred | | -------------SVEPVADMLMGLFFRLLEKDSAFIEDDVFYAISALAASL-GKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNS-LEEDFRRYSDAMMNVLAQM----------------------------------------------------------- |
6 | 2yevA | 0.04 | 0.03 | 1.74 | 0.83 | DEthreader | | ---------MLFFFIIQAGTGFGNFVVPMIMVWSVAASL-----QQFWFYSPT----V-MLLPYLGILAEVASFMVAQGIVVLGTMVWAHHGFNVLMGSGFGAFAGLYYWWPKMSPPAHNLPNPWAA--M-------L--NFLLSSVHH-----TILGVLFFQWEFYQFHHS |
7 | 4rheA | 0.03 | 0.03 | 1.66 | 0.76 | MapAlign | | NGKITLAITGAILCSSAGRIVLDTEVGVKIKEQWFSPVASGSSAPKQMVVCPCS-----TGTMAAICHGMSDNLIE-RAADVVIKERGQLILMVRETPFSTLHLQNML----SLSQQGVTIMPASPGFYHKVETIEDLIDFMVGRVLDHLGIEQDIMPRWG----------- |
8 | 2nbiA | 0.14 | 0.14 | 4.74 | 0.68 | MUSTER | | SRPPSCLSFG-RPDCDVLPTPQNINCPRCCATECRPDNPM-FTPSPDGSPPICSPTMLPTNQPTP---PEPSSAPSDCGEVIEECPLDTCFLPTSDPARPPDCTAVGRPVLPFPNNLGCPACCPFECSPDNPMFTPSPDGSPPPTMLPTPQPSTPTVITSPAPSSQPSQCAE |
9 | 4bptA1 | 0.18 | 0.10 | 3.40 | 0.56 | HHsearch | | -----VAHVP-DAQYSAQEN-------RIWNILFERQLKLCDEFLSGLQTLGLNSSTIPQLPEVSERLKAKTGWQVAPVAAPAATFIRSEEELDYVQE--PDIHELFGHCPMLT---------------------------------------------------------- |
10 | 4fd0A2 | 0.11 | 0.06 | 2.10 | 0.52 | CEthreader | | NSVKSIPKAAFRG--------------------SQINKVVLNEGLQSIGDAFFN---------------------STVQEVVFPTTLEQLEENIFYYCRNLKKADLSRTKLTKLPASTFVYAGVEEVLLPATL--------------------------------------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
|